FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.431e-34
Identity = 70/156 (44.87%), Postives = 99/156 (63.46%), Query Frame = -2
Query:  184 QMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVE-DEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 648
            Q     ++R+ M+++G+KK  A S IE    +  F   D  +P  + VY  ++ +  E++  GY+PD S  LHDVE D  +E ML  HSEK+AVAFG+M L P   I++ KNLR C DCH+ FRF+S++ +R II+RD  RFHHF  G CSC ++W
Sbjct:  635 QWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.708e-34
Identity = 67/151 (44.37%), Postives = 98/151 (64.90%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN--PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            +LR+ MK + ++K    S  E    +  F T   +N  P  + + K ++ +   ++ AGY PD S ALHDV++E++ + L YHSE+LAVA+ ++ L+    I+V KNLRVC+DCH+A + IS +  R+II+RDANRFHHF  G CSC DYW
Sbjct:  556 ELRKLMKTRLVRKSPGCSWTEVENKVHAF-TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705          

HSP 2 Score: 32.3426 bits (72), Expect = 1.708e-34
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = -3
Query:  603 EHTGYFVLMSNIYAASNKWREVGS*EKI*KIR 698
            E++G ++L+SN+YA+  +W +V    K+ K R
Sbjct:  533 ENSGTYILLSNMYASQGRWADVAELRKLMKTR 564          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.228e-34
Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = -2
Query:  184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636
            + ++R+ MK  G+KK  A S +E    I  F   D  +P  +E+ +K E +  +IK  GY+PD S  +  V+ ++RE  L YHSEK+A+AF ++N  P + I + KN+RVC DCH+A +  S +  R+IIVRD NRFHHF+ G CSC DYW
Sbjct:  483 AARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633          

HSP 2 Score: 21.9422 bits (45), Expect = 2.228e-34
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = -3
Query:  636 GYFVLMSNIYAASNKWRE 689
            G  V++ NIYA+  +W +
Sbjct:  465 GPHVILYNIYASGGRWND 482          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.228e-34
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R  M  K + K    S I++ + +  FH  DR +P  +EV  K++ +++++K AGY+PDLSC L+DV++E +E ML  HSEKLA+ FG++       I+V KNLR+C DCH+  +  S ++ R++ +RD NRFH    G CSC DYW
Sbjct:  481 VRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628          

HSP 2 Score: 29.6462 bits (65), Expect = 2.228e-34
Identity = 9/24 (37.50%), Postives = 19/24 (79.17%), Query Frame = -3
Query:  627 EHTGYFVLMSNIYAASNKWREVGS 698
            E+ G +V++SN+YA++ +W +V +
Sbjct:  457 ENAGNYVILSNLYASAGRWADVNN 480          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.904e-34
Identity = 67/150 (44.67%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVE-DEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            +LR  MK K +      S IE    +  F   D  +P  +E+YK +  +  ++K+AGY+ +++  LH++E +E++ + L YHSEKLA+AFGI+   P   I+VTKNLR C DCH+  +F+S +Y R +IVRD +RFHHF+GG+CSCND+W
Sbjct:  442 ELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591          

HSP 2 Score: 24.2534 bits (51), Expect = 2.904e-34
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            E  G +VL+ N Y+   KW +V
Sbjct:  419 EEAGDYVLLLNTYSTVGKWEKV 440          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 70/171 (40.94%), Postives = 105/171 (61.40%), Query Frame = -2
Query:  184 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTAD-RVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 693
            Y++  +N+    C  Q  +   LR+ MK K +KKP  +S+IE    I  F   D + +P   ++ +K E +  +I++ GY  +   A  DV++E++E  ++ HSEKLA+A+G+M   P   I++ KNLRVC DCH+  + IS +Y R++IVRD NRFHHF  G CSC DYW
Sbjct:  454 YYVLLSNI--YACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.928e-34
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R+ M    L+K   +SVIE       F   D  +    E+Y+ +E++    K  GY P     +H VE+E++E  L YHSEKLAVAFG++  T +  I + KNLR+C DCHSAF++IS +  R+I VRD  RFHHF+ G+CSC DYW
Sbjct:  437 IRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLK-TVDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583          

HSP 2 Score: 25.7942 bits (55), Expect = 4.928e-34
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            ++ G+ V++SNIYA S K  EV
Sbjct:  413 DNPGHHVMLSNIYALSGKTDEV 434          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-33
Identity = 60/152 (39.47%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  184 RSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 639
            R  ++R  MK KGL K    S +E    ++ F   D+ +P ++E+ ++VE +   +K  G++ +   +LHD+ DE+ E  L  HSE++A+A+G+++      +++TKNLR C +CH+A + IS +  R+I+VRD NRFHHF+ G CSC DYW
Sbjct:  543 RVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694          

HSP 2 Score: 27.7202 bits (60), Expect = 1.086e-33
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = -3
Query:  633 HTGYFVLMSNIYAASNKWREV 695
            +TG++V +SN+YAA+  W  V
Sbjct:  524 NTGHYVQLSNLYAAARLWDRV 544          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636
            + K R+ ++++G KK    S +E    +  F   +R +   KE+Y+K+  +  E++ AGY+ D S  L +V+ +++   + YHSE+LA+AFG++    +  I+V KNLRVC DCH+A +F+S   RR IIVRD NRFH FE G CSCNDYW
Sbjct:  438 AAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.842e-33
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPE------AVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R  M+ K + K    S I+       F   D+ +    E+Y K++ +  ++K+AGY+PD    L DVE+E+++ ++ +HSEKLA+ FG+MN   E       VI++ KNLRVC DCH  F+ +S +Y R+IIVRD  RFH ++ G CSC DYW
Sbjct:  569 IRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722          

HSP 2 Score: 31.187 bits (69), Expect = 1.842e-33
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            +H G  VLMSNIYA   +W +V
Sbjct:  545 DHDGALVLMSNIYAREQRWEDV 566          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PPR57_ARATH1.431e-3444.87Pentatricopeptide repeat-containing protein At1g25... [more]
PPR25_ARATH1.708e-3444.37Pentatricopeptide repeat-containing protein At1g09... [more]
PP252_ARATH2.228e-3444.37Pentatricopeptide repeat-containing protein At3g24... [more]
PP227_ARATH2.228e-3442.57Putative pentatricopeptide repeat-containing prote... [more]
PP267_ARATH2.904e-3444.67Pentatricopeptide repeat-containing protein At3g47... [more]
PP367_ARATH4.163e-3440.94Pentatricopeptide repeat-containing protein At5g06... [more]
PP182_ARATH4.928e-3444.59Pentatricopeptide repeat-containing protein At2g33... [more]
PP224_ARATH1.086e-3339.47Pentatricopeptide repeat-containing protein At3g12... [more]
PP429_ARATH1.211e-3343.05Putative pentatricopeptide repeat-containing prote... [more]
PP311_ARATH1.842e-3340.91Pentatricopeptide repeat-containing protein At4g14... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
back to top