FC868864
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.431e-34 Identity = 70/156 (44.87%), Postives = 99/156 (63.46%), Query Frame = -2 Query: 184 QMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVE-DEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 648 Q ++R+ M+++G+KK A S IE + F D +P + VY ++ + E++ GY+PD S LHDVE D +E ML HSEK+AVAFG+M L P I++ KNLR C DCH+ FRF+S++ +R II+RD RFHHF G CSC ++W Sbjct: 635 QWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 1.708e-34 Identity = 67/151 (44.37%), Postives = 98/151 (64.90%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN--PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 +LR+ MK + ++K S E + F T +N P + + K ++ + ++ AGY PD S ALHDV++E++ + L YHSE+LAVA+ ++ L+ I+V KNLRVC+DCH+A + IS + R+II+RDANRFHHF G CSC DYW Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAF-TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705 HSP 2 Score: 32.3426 bits (72), Expect = 1.708e-34 Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = -3 Query: 603 EHTGYFVLMSNIYAASNKWREVGS*EKI*KIR 698 E++G ++L+SN+YA+ +W +V K+ K R Sbjct: 533 ENSGTYILLSNMYASQGRWADVAELRKLMKTR 564
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.228e-34 Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = -2 Query: 184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636 + ++R+ MK G+KK A S +E I F D +P +E+ +K E + +IK GY+PD S + V+ ++RE L YHSEK+A+AF ++N P + I + KN+RVC DCH+A + S + R+IIVRD NRFHHF+ G CSC DYW Sbjct: 483 AARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633 HSP 2 Score: 21.9422 bits (45), Expect = 2.228e-34 Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = -3 Query: 636 GYFVLMSNIYAASNKWRE 689 G V++ NIYA+ +W + Sbjct: 465 GPHVILYNIYASGGRWND 482
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 2.228e-34 Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R M K + K S I++ + + FH DR +P +EV K++ +++++K AGY+PDLSC L+DV++E +E ML HSEKLA+ FG++ I+V KNLR+C DCH+ + S ++ R++ +RD NRFH G CSC DYW Sbjct: 481 VRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628 HSP 2 Score: 29.6462 bits (65), Expect = 2.228e-34 Identity = 9/24 (37.50%), Postives = 19/24 (79.17%), Query Frame = -3 Query: 627 EHTGYFVLMSNIYAASNKWREVGS 698 E+ G +V++SN+YA++ +W +V + Sbjct: 457 ENAGNYVILSNLYASAGRWADVNN 480
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.904e-34 Identity = 67/150 (44.67%), Postives = 100/150 (66.67%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVE-DEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 +LR MK K + S IE + F D +P +E+YK + + ++K+AGY+ +++ LH++E +E++ + L YHSEKLA+AFGI+ P I+VTKNLR C DCH+ +F+S +Y R +IVRD +RFHHF+GG+CSCND+W Sbjct: 442 ELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591 HSP 2 Score: 24.2534 bits (51), Expect = 2.904e-34 Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = -3 Query: 633 EHTGYFVLMSNIYAASNKWREV 698 E G +VL+ N Y+ KW +V Sbjct: 419 EEAGDYVLLLNTYSTVGKWEKV 440
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34 Identity = 70/171 (40.94%), Postives = 105/171 (61.40%), Query Frame = -2 Query: 184 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTAD-RVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 693 Y++ +N+ C Q + LR+ MK K +KKP +S+IE I F D + +P ++ +K E + +I++ GY + A DV++E++E ++ HSEKLA+A+G+M P I++ KNLRVC DCH+ + IS +Y R++IVRD NRFHHF G CSC DYW Sbjct: 454 YYVLLSNI--YACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.928e-34 Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R+ M L+K +SVIE F D + E+Y+ +E++ K GY P +H VE+E++E L YHSEKLAVAFG++ T + I + KNLR+C DCHSAF++IS + R+I VRD RFHHF+ G+CSC DYW Sbjct: 437 IRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLK-TVDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583 HSP 2 Score: 25.7942 bits (55), Expect = 4.928e-34 Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -3 Query: 633 EHTGYFVLMSNIYAASNKWREV 698 ++ G+ V++SNIYA S K EV Sbjct: 413 DNPGHHVMLSNIYALSGKTDEV 434
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.086e-33 Identity = 60/152 (39.47%), Postives = 97/152 (63.82%), Query Frame = -2 Query: 184 RSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 639 R ++R MK KGL K S +E ++ F D+ +P ++E+ ++VE + +K G++ + +LHD+ DE+ E L HSE++A+A+G+++ +++TKNLR C +CH+A + IS + R+I+VRD NRFHHF+ G CSC DYW Sbjct: 543 RVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694 HSP 2 Score: 27.7202 bits (60), Expect = 1.086e-33 Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = -3 Query: 633 HTGYFVLMSNIYAASNKWREV 695 +TG++V +SN+YAA+ W V Sbjct: 524 NTGHYVQLSNLYAAARLWDRV 544
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33 Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -2 Query: 184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636 + K R+ ++++G KK S +E + F +R + KE+Y+K+ + E++ AGY+ D S L +V+ +++ + YHSE+LA+AFG++ + I+V KNLRVC DCH+A +F+S RR IIVRD NRFH FE G CSCNDYW Sbjct: 438 AAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.842e-33 Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPE------AVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R M+ K + K S I+ F D+ + E+Y K++ + ++K+AGY+PD L DVE+E+++ ++ +HSEKLA+ FG+MN E VI++ KNLRVC DCH F+ +S +Y R+IIVRD RFH ++ G CSC DYW Sbjct: 569 IRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722 HSP 2 Score: 31.187 bits (69), Expect = 1.842e-33 Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = -3 Query: 633 EHTGYFVLMSNIYAASNKWREV 698 +H G VLMSNIYA +W +V Sbjct: 545 DHDGALVLMSNIYAREQRWEDV 566 The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bpback to top |