FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.845e-33
Identity = 64/149 (42.95%), Postives = 90/149 (60.40%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R  M+++G+KK    S IE  K I  F   D  +P   EV KK+  +   +   GY+P+ +  L D+E E  E  L +HSEKLA+AFG+M L  E VI++ KNLR+C DCH   +  S +  R I++RD  R+HHF+ G CSC DYW
Sbjct:  482 EIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630          

HSP 2 Score: 28.4906 bits (62), Expect = 1.845e-33
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            E  G + L+SNIYA S KW  V
Sbjct:  459 EDAGTYTLLSNIYANSQKWDSV 480          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.845e-33
Identity = 66/150 (44.00%), Postives = 95/150 (63.33%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVED--EDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            LR  ++ +G++K    S I     +  F + DR +P  KE+Y K+  +   I+ AGY+PD+S  +   E   E++E  L  HSEKLAV FG++   P   + V KNLR+C DCHSA + +S +Y R+II+RD NRFH F+GG+CSC+DYW
Sbjct:  474 LRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623          

HSP 2 Score: 21.557 bits (44), Expect = 1.845e-33
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = -3
Query:  645 HTGYFVLMSNIYAASNK 695
            +T Y +LMSN+Y A  +
Sbjct:  451 NTEYQILMSNMYVAEGR 467          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.123e-33
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            +LR  M+ K +KK    S I++   +  F   D  +PY  ++Y K+E +  +I   GY PD S   HDVE+  +  MLNYHSE+LA+AFG++ +     I+V KNLRVC DCH+A + IS +  R+I+VRDA RFH F+ GTCSC D+W
Sbjct:  595 QLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743          

HSP 2 Score: 24.6386 bits (52), Expect = 3.123e-33
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = -3
Query:  633 HTGYFVLMSNIYAASNKWREV 695
            H   + L+S+IYA+  KW  V
Sbjct:  573 HPAGYTLLSSIYASKGKWDSV 593          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.128e-33
Identity = 61/149 (40.94%), Postives = 100/149 (67.11%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIK-MAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R+ M  + +KK  A+S++E GK +  F   ++      E ++K++ + + +K  AGY P+++ AL+DVE+E++E  ++ HSEKLA+AF +  L+  A I++ KNLR+C DCH+  +  S +Y  +I+VRD NRFH F+ G+CSC DYW
Sbjct:  495 IRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643          

HSP 2 Score: 29.6462 bits (65), Expect = 3.128e-33
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = -3
Query:  618 HTGYFVLMSNIYAASNKWREVGS*EK 695
            ++G  VL+SN YA + KW++V S  K
Sbjct:  472 NSGDLVLLSNAYATAGKWKDVASIRK 497          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 63/149 (42.28%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R  MK KG+ K    S IE    +  F   DR +   KE+Y  +  ++  IK  GY+P+ +  L D+E+ ++E  L  HSE+LA+A+G+++  P + +++ KNLRVC+DCH+  + IS I  RKI++RD NRFHHF  G+CSC D+W
Sbjct:  484 KVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.060e-33
Identity = 61/149 (40.94%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R  MK KGL+KP   S I+       F + D  +P    +   ++ ++      G++PDLS  L DV+++++  ML+ HSEKLA+A+G+++      I++ KNLRVC+DCHS  +F S +Y R+II+RD NRFH+   G CSC D+W
Sbjct:  694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842          

HSP 2 Score: 31.187 bits (69), Expect = 4.060e-33
Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            E TG +VL+SN+YA++ +W ++
Sbjct:  671 ERTGSYVLLSNVYASAGRWNDM 692          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 62/148 (41.89%), Postives = 97/148 (65.54%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R+ MK+KG++K    SV+E   ++  F   D+ +P + ++    + ++  +++AGY  D +  + D+++E++E  L  HSEK A+AFGIM+L  +  I++ KNLRVC DCH     IS I+ R+IIVRD NRFHHF+ G CSCN +W
Sbjct:  465 VRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.954e-33
Identity = 61/150 (40.67%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKM-AGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R  MK  G++K    S IE    +  F   D+ +P  KE+Y+K+  +  +++   GY+ D    LH+V++ ++  ML+ HSE++A+A+G++     A +++TKNLRVC DCH+  + +S ++RR I++RDANRFHHFE G CSC D W
Sbjct:  811 KVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960          

HSP 2 Score: 24.6386 bits (52), Expect = 8.954e-33
Identity = 8/22 (36.36%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            ++ G  VL+SN++A   +W +V
Sbjct:  788 KNPGNLVLVSNVFAEQGRWNDV 809          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 9.000e-33
Identity = 63/152 (41.45%), Postives = 94/152 (61.84%), Query Frame = -2
Query:  184 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCA--LHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633
            G +R+ M   G++K    S IE       F   D  +P  K++Y++++ +   ++  GY+PD S A  +    D  +E+ L  HSE+LA+AFG++NL P+  I++ KNLRVCNDCH   + IS ++  +IIVRD  RFHHF+ G+CSC DYW
Sbjct:  487 GIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638          

HSP 2 Score: 29.6462 bits (65), Expect = 9.000e-33
Identity = 10/26 (38.46%), Postives = 20/26 (76.92%), Query Frame = -3
Query:  615 TGYFVLMSNIYAASNKWREVGS*EKI 692
            +G +VL+S +YA++++W +VG   K+
Sbjct:  467 SGAYVLLSRVYASASRWNDVGIVRKL 492          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.025e-32
Identity = 69/150 (46.00%), Postives = 96/150 (64.00%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDED-REHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            +LR+ M+  GLKK    S IE    I  F + D  +P  ++VY K+  +  ++K  GY P++S  L  +E+E+ +E  LN HSEKLA+ +G+++     VI+V KNLRVC DCHS  + IS +Y R+IIVRD  RFHHF  G CSCND+W
Sbjct:  589 ELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP147_ARATH1.845e-3342.95Pentatricopeptide repeat-containing protein At2g03... [more]
PP386_ARATH1.845e-3344.00Pentatricopeptide repeat-containing protein At5g15... [more]
PP108_ARATH3.123e-3345.64Putative pentatricopeptide repeat-containing prote... [more]
PP122_ARATH3.128e-3340.94Pentatricopeptide repeat-containing protein At1g74... [more]
PP354_ARATH3.524e-3342.28Pentatricopeptide repeat-containing protein At4g37... [more]
PP249_ARATH4.060e-3340.94Pentatricopeptide repeat-containing protein At3g22... [more]
PP410_ARATH6.011e-3341.89Putative pentatricopeptide repeat-containing prote... [more]
PP296_ARATH8.954e-3340.67Pentatricopeptide repeat-containing protein At3g63... [more]
PPR85_ARATH9.000e-3341.45Pentatricopeptide repeat-containing protein At1g59... [more]
PP175_ARATH1.025e-3246.00Pentatricopeptide repeat-containing protein At2g29... [more]

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Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
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