FC868864
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 136.346 bits (342), Expect = 1.173e-32 Identity = 61/154 (39.61%), Postives = 102/154 (66.23%), Query Frame = -2 Query: 184 GKLREDMKNKG---LKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMA-GYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633 GK+ E + G ++K S +E K+ + F+ + +P +++++ ++ + E+++ GY+PD S LHD++++++E +L +HSE+ AVA+G++ P I++ KNLRVC DCH + IS I R+IIVRDA R+HHF+GG CSCND+W Sbjct: 459 GKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612 HSP 2 Score: 24.6386 bits (52), Expect = 1.173e-32 Identity = 8/17 (47.06%), Postives = 15/17 (88.24%), Query Frame = -3 Query: 633 FVLMSNIYAASNKWREV 683 ++L+SNIYA+++ W +V Sbjct: 445 YILLSNIYASASLWGKV 461
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.376e-32 Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R +M+ KG+ K S +E + F D + +Y ++ + ++ AGY+ D L D+ ++D+E L+YHSEKLA+AF +M P +++ KNLR+C DCH + IS ++ R+I+VRD NRFHHF G+CSC D+W Sbjct: 426 IRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573 HSP 2 Score: 29.261 bits (64), Expect = 3.376e-32 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3 Query: 633 HTGYFVLMSNIYAASNKWREV 695 ++G +VL+SN+YA + +W EV Sbjct: 403 NSGAYVLLSNVYAKTGRWMEV 423
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31 Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = -2 Query: 184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMA-GYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636 + ++R MK KGL + + S IE+G I F D +P +++ KK++ + ++K GY LHDV ++ +E M+N HSEK+A+AFG++ ++P I + KNLR+C DCH + IS I +R+II+RD+ RFHHF G+CSC+DYW Sbjct: 457 ASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.132e-31 Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDED-REHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R+ +K+K + K +S IE GK++ F + D P + +YK +E + + GY+PD ++E+E+ + ++ HSE+LA+AFG++N P +QV KNLRVC DCH + IS I R+I+VRDANRFH F+ GTCSC D W Sbjct: 734 IRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882 HSP 2 Score: 26.9498 bits (58), Expect = 2.132e-31 Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = -3 Query: 633 GYFVLMSNIYAASNKWREV 689 GY +L SN YAA KW +V Sbjct: 713 GYSILASNAYAALRKWDKV 731
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31 Identity = 67/168 (39.88%), Postives = 97/168 (57.74%), Query Frame = -2 Query: 184 YIRCIKQMARSG------KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEG-GTCSCNDYW 666 Y+ A SG K+R+ M + +KK +S IE F DR +P ++Y K+E ++ +K GY PD S L D++DE +E +L HSE+LA+AFG++ + + + KNLRVC DCH + I+ I R+I+VRD+NRFHHF G CSC D+W Sbjct: 701 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30 Identity = 63/156 (40.38%), Postives = 95/156 (60.90%), Query Frame = -2 Query: 184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651 K+ + K+RE M +G++K S +E+G I F D + K +YK +E + + K G++ D L DV +E++E LNYHSEKLA+A+ I+ +P I++ KN+R+C+DCH+ + +S + R II+RD RFH FE G CSC DYW Sbjct: 379 KKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30 Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN-PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R++M+ + K S IE GK + F N P + +E ++ AGY PD S LHDV++E++ L+ HSE+LAVA+G++ L I+V KNLRVC DCH+A + IS + R+II+RDANRFHHF G CSC DYW Sbjct: 556 VRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30 Identity = 63/157 (40.13%), Postives = 97/157 (61.78%), Query Frame = -2 Query: 184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL-TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651 KQ A +R+ MK G+KK S IE+ D+ F +P K + +E + ++ AGY+PD + L D++DE+++ L HSE+LA+A+G++ + + I + KNLR+C+DCHSA + IS I +R +++RD NRFHHF G CSC D+W Sbjct: 666 KQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 8.573e-30 Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 K+R+ M L+K A S IE + + F +R ++E+ + ++I GY PD HD+ +E++ L HSEKLA+ +G++ + I+V KNLR+C DCH+A + IS + R+I+VRD RFHHF+ G CSC DYW Sbjct: 822 KVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970 HSP 2 Score: 26.1794 bits (56), Expect = 8.573e-30 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -3 Query: 633 FVLMSNIYAASNKWREV 683 +VL+SN+YA KW +V Sbjct: 804 YVLLSNLYAGLGKWEDV 820
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 8.605e-30 Identity = 60/150 (40.00%), Postives = 91/150 (60.67%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN-PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 +++ MK+ LKK A S +E K+ F D + P +++ + +E + + K GY+ D SC D+E+ +E L+ HSEKLA+AF + + I++ KNLRVC DCHS + +S + +R+II RD+ RFHHF G+CSC DYW Sbjct: 590 EMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGS-IRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738 HSP 2 Score: 28.1054 bits (61), Expect = 8.605e-30 Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = -3 Query: 633 GYFVLMSNIYAASNKWREV 689 G +LMSN+YA++ KW V Sbjct: 570 GTLILMSNLYASTGKWNRV 588 The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bpback to top |