FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.173e-32
Identity = 61/154 (39.61%), Postives = 102/154 (66.23%), Query Frame = -2
Query:  184 GKLREDMKNKG---LKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMA-GYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633
            GK+ E  +  G   ++K    S +E  K+ + F+  +  +P  +++++ ++ +  E+++  GY+PD S  LHD++++++E +L +HSE+ AVA+G++   P   I++ KNLRVC DCH   + IS I  R+IIVRDA R+HHF+GG CSCND+W
Sbjct:  459 GKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612          

HSP 2 Score: 24.6386 bits (52), Expect = 1.173e-32
Identity = 8/17 (47.06%), Postives = 15/17 (88.24%), Query Frame = -3
Query:  633 FVLMSNIYAASNKWREV 683
            ++L+SNIYA+++ W +V
Sbjct:  445 YILLSNIYASASLWGKV 461          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.376e-32
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R +M+ KG+ K    S +E    +  F   D      + +Y  ++ +   ++ AGY+ D    L D+ ++D+E  L+YHSEKLA+AF +M   P   +++ KNLR+C DCH   + IS ++ R+I+VRD NRFHHF  G+CSC D+W
Sbjct:  426 IRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573          

HSP 2 Score: 29.261 bits (64), Expect = 3.376e-32
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  633 HTGYFVLMSNIYAASNKWREV 695
            ++G +VL+SN+YA + +W EV
Sbjct:  403 NSGAYVLLSNVYAKTGRWMEV 423          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = -2
Query:  184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMA-GYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636
            + ++R  MK KGL + +  S IE+G  I  F   D  +P  +++ KK++ +  ++K   GY       LHDV ++ +E M+N HSEK+A+AFG++ ++P   I + KNLR+C DCH   + IS I +R+II+RD+ RFHHF  G+CSC+DYW
Sbjct:  457 ASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.132e-31
Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDED-REHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R+ +K+K + K   +S IE GK++  F + D   P  + +YK +E +   +   GY+PD      ++E+E+ +  ++  HSE+LA+AFG++N  P   +QV KNLRVC DCH   + IS I  R+I+VRDANRFH F+ GTCSC D W
Sbjct:  734 IRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882          

HSP 2 Score: 26.9498 bits (58), Expect = 2.132e-31
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = -3
Query:  633 GYFVLMSNIYAASNKWREV 689
            GY +L SN YAA  KW +V
Sbjct:  713 GYSILASNAYAALRKWDKV 731          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31
Identity = 67/168 (39.88%), Postives = 97/168 (57.74%), Query Frame = -2
Query:  184 YIRCIKQMARSG------KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEG-GTCSCNDYW 666
            Y+      A SG      K+R+ M  + +KK   +S IE       F   DR +P   ++Y K+E ++  +K  GY PD S  L D++DE +E +L  HSE+LA+AFG++     + + + KNLRVC DCH   + I+ I  R+I+VRD+NRFHHF   G CSC D+W
Sbjct:  701 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 63/156 (40.38%), Postives = 95/156 (60.90%), Query Frame = -2
Query:  184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651
            K+   + K+RE M  +G++K    S +E+G  I  F   D  +   K +YK +E +  + K  G++ D    L DV +E++E  LNYHSEKLA+A+ I+  +P   I++ KN+R+C+DCH+  + +S +  R II+RD  RFH FE G CSC DYW
Sbjct:  379 KKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN-PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R++M+   + K    S IE GK +  F      N P    +   +E     ++ AGY PD S  LHDV++E++   L+ HSE+LAVA+G++ L     I+V KNLRVC DCH+A + IS +  R+II+RDANRFHHF  G CSC DYW
Sbjct:  556 VRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 63/157 (40.13%), Postives = 97/157 (61.78%), Query Frame = -2
Query:  184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL-TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651
            KQ A    +R+ MK  G+KK    S IE+  D+  F      +P  K +   +E + ++   AGY+PD +  L D++DE+++  L  HSE+LA+A+G++ + +    I + KNLR+C+DCHSA + IS I +R +++RD NRFHHF  G CSC D+W
Sbjct:  666 KQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 8.573e-30
Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R+ M    L+K A  S IE  + +  F   +R    ++E+      + ++I   GY PD     HD+ +E++   L  HSEKLA+ +G++  +    I+V KNLR+C DCH+A + IS +  R+I+VRD  RFHHF+ G CSC DYW
Sbjct:  822 KVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970          

HSP 2 Score: 26.1794 bits (56), Expect = 8.573e-30
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -3
Query:  633 FVLMSNIYAASNKWREV 683
            +VL+SN+YA   KW +V
Sbjct:  804 YVLLSNLYAGLGKWEDV 820          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.605e-30
Identity = 60/150 (40.00%), Postives = 91/150 (60.67%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN-PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            +++  MK+  LKK  A S +E  K+   F   D  + P  +++ + +E +  + K  GY+ D SC   D+E+  +E  L+ HSEKLA+AF +      + I++ KNLRVC DCHS  + +S + +R+II RD+ RFHHF  G+CSC DYW
Sbjct:  590 EMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGS-IRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738          

HSP 2 Score: 28.1054 bits (61), Expect = 8.605e-30
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = -3
Query:  633 GYFVLMSNIYAASNKWREV 689
            G  +LMSN+YA++ KW  V
Sbjct:  570 GTLILMSNLYASTGKWNRV 588          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP308_ARATH1.173e-3239.61Pentatricopeptide repeat-containing protein At4g14... [more]
PP295_ARATH3.376e-3238.51Pentatricopeptide repeat-containing protein At3g62... [more]
PP411_ARATH1.934e-3142.11Pentatricopeptide repeat-containing protein At5g40... [more]
PP210_ARATH2.132e-3142.28Pentatricopeptide repeat-containing protein At3g03... [more]
PP172_ARATH2.526e-3139.88Pentatricopeptide repeat-containing protein At2g27... [more]
PP428_ARATH2.138e-3040.38Pentatricopeptide repeat-containing protein At5g50... [more]
PPR84_ARATH3.647e-3044.30Pentatricopeptide repeat-containing protein At1g56... [more]
PP377_ARATH3.647e-3040.13Putative pentatricopeptide repeat-containing prote... [more]
PPR48_ARATH8.573e-3038.93Pentatricopeptide repeat-containing protein At1g18... [more]
PP446_ARATH8.605e-3040.00Pentatricopeptide repeat-containing protein At5g65... [more]

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Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
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