FC868864
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29 Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = -2 Query: 184 EVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 510 + Y K++S+ E++ AGY+P+ LHD+++E +E L +HSE+LA+AFGI+N P I+V KNLR+C DCH+ + +S I R+IIVRD RFHHF G CSC DYW Sbjct: 131 KAYVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29 Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = -2 Query: 184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHD-VEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651 K+ ++ + R MK +G+ K S I F DR +P +++ K M +++ GY+P+L L D V+D++RE +++ HSEKLA+ +G++ P +I++ KNLRVC DCH + IS IY+R I++RD RFHHF G CSC DYW Sbjct: 464 KKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29 Identity = 56/149 (37.58%), Postives = 97/149 (65.10%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 ++++ ++++GL+K +E + + F + D NP ++++ + +A ++K GY+P L+++E E++E ++ HSEKLA+AFG++N + I++TKNLR+C DCH +FIS ++I+VRD NRFH F+ G CSC DYW Sbjct: 509 RVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28 Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = -2 Query: 184 ARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPY----WKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 642 A + + E +++KGL A + +E G F + DR + Y +++Y+KV+ + EI GY + L DV++++ E + YHSEKLA+A+G++N +Q+T+N R+C +CH FIS + R+++VRDA+RFHHF+ G CSC YW Sbjct: 545 AEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.035e-28 Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = -2 Query: 184 RSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL-TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 639 RS +RE+M+ +G +K A S I + I FH D +P K++Y+ +E + +E GY P+ L +V++ ++ L +HS KLAV +GI++ T ++V KN+ +C DCH F++IS + +R+I++RD++ FHHF G CSC D W Sbjct: 744 RSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896 HSP 2 Score: 22.7126 bits (47), Expect = 2.035e-28 Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = -3 Query: 642 FVLMSNIYAASNKW 683 ++L SNIY+AS W Sbjct: 729 YILKSNIYSASGFW 742
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28 Identity = 63/150 (42.00%), Postives = 90/150 (60.00%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVE-IKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 K+RE MK +G+KK A S ++ IQ F + YKKV + E I+ +GY P+ S LHDV++E + + + HSE+LA + +++ I++TKNLRVC DCHS + +S + RR I++RD RFHHF G CSC DYW Sbjct: 561 KIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.633e-28 Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDE----DREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R+ M+ K ++K S IE K F D +P +EV + +E M ++K GY+ D A+ EDE D E L +HSEKLAVAFG+M+ + V KNLR+C DCH+A +F+S + R+IIVRD RFH F+ G CSC DYW Sbjct: 571 VRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVK-EDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721 HSP 2 Score: 26.1794 bits (56), Expect = 7.633e-28 Identity = 9/22 (40.91%), Postives = 16/22 (72.73%), Query Frame = -3 Query: 618 FVLMSNIYAASNKWREVGS*EK 683 +V+++N+YA + KW E+ S K Sbjct: 552 YVMLANMYADARKWEEMASVRK 573
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27 Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = -2 Query: 184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651 KQ K R+ +++ +KK S I+ + F + +P +E+ ++++ ++ + GY P + LHDVE +E +L HSEKLA+ FG+M L + +++ KNLR+C DCH + S RR IIVRD NRFHHF G CSC D+W Sbjct: 480 KQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27 Identity = 53/149 (35.57%), Postives = 87/149 (58.39%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 K R ++ + ++ +S IE + F D + +E+ K++ + GY P ++HD+E+E++E++ HSEKLA+ G + P I++ KNLR+C DCHS +++S I +R I++RDA +FHHF+ G CSC DYW Sbjct: 517 KRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26 Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = -2 Query: 184 KLREDMKNKGLKK-PAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 ++R+ +K KGLKK PA V++ + F + +P ++ K+E + + + GY PDLS +DV D + +L H+EKLA+AF ++ ++ I + KNLR+C DCH R S + + II+RD RFHHF G CSC D+W Sbjct: 508 RVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657 The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bpback to top |