FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = -2
Query:  184 EVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 510
            + Y K++S+  E++ AGY+P+    LHD+++E +E  L +HSE+LA+AFGI+N  P   I+V KNLR+C DCH+  + +S I  R+IIVRD  RFHHF  G CSC DYW
Sbjct:  131 KAYVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHD-VEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651
            K+  ++ + R  MK +G+ K    S I        F   DR +P  +++  K   M  +++  GY+P+L   L D V+D++RE +++ HSEKLA+ +G++   P  +I++ KNLRVC DCH   + IS IY+R I++RD  RFHHF  G CSC DYW
Sbjct:  464 KKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29
Identity = 56/149 (37.58%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++++ ++++GL+K      +E  + +  F + D  NP  ++++  +  +A ++K  GY+P     L+++E E++E ++  HSEKLA+AFG++N +    I++TKNLR+C DCH   +FIS    ++I+VRD NRFH F+ G CSC DYW
Sbjct:  509 RVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = -2
Query:  184 ARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPY----WKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 642
            A +  + E +++KGL    A + +E G     F + DR + Y     +++Y+KV+ +  EI   GY  +    L DV++++ E +  YHSEKLA+A+G++N      +Q+T+N R+C +CH    FIS +  R+++VRDA+RFHHF+ G CSC  YW
Sbjct:  545 AEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.035e-28
Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  184 RSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL-TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 639
            RS  +RE+M+ +G +K  A S I +   I  FH  D  +P  K++Y+ +E + +E    GY P+    L +V++  ++  L +HS KLAV +GI++  T    ++V KN+ +C DCH  F++IS + +R+I++RD++ FHHF  G CSC D W
Sbjct:  744 RSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896          

HSP 2 Score: 22.7126 bits (47), Expect = 2.035e-28
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = -3
Query:  642 FVLMSNIYAASNKW 683
            ++L SNIY+AS  W
Sbjct:  729 YILKSNIYSASGFW 742          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 63/150 (42.00%), Postives = 90/150 (60.00%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVE-IKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+RE MK +G+KK A  S ++    IQ F           + YKKV +   E I+ +GY P+ S  LHDV++E + + +  HSE+LA  + +++      I++TKNLRVC DCHS  + +S + RR I++RD  RFHHF  G CSC DYW
Sbjct:  561 KIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.633e-28
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDE----DREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R+ M+ K ++K    S IE  K    F   D  +P  +EV + +E M  ++K  GY+ D   A+   EDE    D E  L +HSEKLAVAFG+M+      + V KNLR+C DCH+A +F+S +  R+IIVRD  RFH F+ G CSC DYW
Sbjct:  571 VRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVK-EDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721          

HSP 2 Score: 26.1794 bits (56), Expect = 7.633e-28
Identity = 9/22 (40.91%), Postives = 16/22 (72.73%), Query Frame = -3
Query:  618 FVLMSNIYAASNKWREVGS*EK 683
            +V+++N+YA + KW E+ S  K
Sbjct:  552 YVMLANMYADARKWEEMASVRK 573          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = -2
Query:  184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651
            KQ     K R+ +++  +KK    S I+    +  F   +  +P  +E+   ++++ ++ +  GY P +   LHDVE   +E +L  HSEKLA+ FG+M L   + +++ KNLR+C DCH   +  S   RR IIVRD NRFHHF  G CSC D+W
Sbjct:  480 KQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 53/149 (35.57%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K R  ++ +  ++   +S IE    +  F   D  +   +E+  K++ +       GY P    ++HD+E+E++E++   HSEKLA+  G +   P   I++ KNLR+C DCHS  +++S I +R I++RDA +FHHF+ G CSC DYW
Sbjct:  517 KRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = -2
Query:  184 KLREDMKNKGLKK-PAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R+ +K KGLKK PA   V++    +  F   +  +P   ++  K+E +   + + GY PDLS   +DV D  +  +L  H+EKLA+AF ++    ++ I + KNLR+C DCH   R  S +  + II+RD  RFHHF  G CSC D+W
Sbjct:  508 RVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PPR74_ARATH1.810e-2950.46Pentatricopeptide repeat-containing protein At1g47... [more]
PP449_ARATH1.810e-2939.49Pentatricopeptide repeat-containing protein At5g66... [more]
PP265_ARATH5.266e-2937.58Pentatricopeptide repeat-containing protein At3g46... [more]
PP427_ARATH2.001e-2837.58Pentatricopeptide repeat-containing protein At5g50... [more]
PP363_ARATH2.035e-2837.91Pentatricopeptide repeat-containing protein At5g03... [more]
PP229_ARATH7.604e-2842.00Pentatricopeptide repeat-containing protein At3g14... [more]
PP274_ARATH7.633e-2843.42Pentatricopeptide repeat-containing protein At3g49... [more]
PP364_ARATH2.212e-2737.82Pentatricopeptide repeat-containing protein At5g04... [more]
PPR10_ARATH6.437e-2735.57Pentatricopeptide repeat-containing protein At1g04... [more]
PP417_ARATH5.449e-2638.00Pentatricopeptide repeat-containing protein At5g44... [more]

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Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
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