FC868864
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25 Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = -2 Query: 184 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 693 Y++ AN+ Y K + +LR+ + +GL+K S IE + F D NP + + + + + GY P AL D E+ ++E L HSEKLA+A GI++ +I+VTKNLRVC DCH +F+S + RR+I++RD+NRFH F+ G CSC +W Sbjct: 704 YYVLMANI-YAEAEK-WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.493e-25 Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMP-DLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 +R+ +++ L+ +S IE G + F D+++P +Y ++ + +AGY P D + + D HSEKLA+A+G+M T +++TKNLRVC DCHS +++S + R+IIVRD RFHHF G CSCNDYW Sbjct: 433 MRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581 HSP 2 Score: 22.7126 bits (47), Expect = 1.493e-25 Identity = 10/27 (37.04%), Postives = 18/27 (66.67%), Query Frame = -3 Query: 615 HTGYFVLMSNIYAASNKWREVGS*EKI 695 + G +VLM++IY+A+N + S K+ Sbjct: 410 NAGDYVLMTSIYSAANDAQAFASMRKL 436
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25 Identity = 56/152 (36.84%), Postives = 93/152 (61.18%), Query Frame = -2 Query: 184 EDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREH-MLNYHSEKLAVAFGIMNLTPEA-----VIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 621 ++M+ ++K S E G + F + R P + VY++++ + +K GY+P++ A D+EDE++E L +HSEKLA+AF +M + +IQ+ KN R+C DCH+ + S + ++I++RD+NRFHHF+ +CSCNDYW Sbjct: 594 KEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.288e-25 Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = -2 Query: 184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGY------MPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636 S LR +MK G K A S IE + FH D E+ + ++ + +K G+ + S DV++E ++ M++ H E+LA+A+G+++L + I++ NLR+C DCH AF+ IS I R+I+VRD NRFH F+ G+C+C DYW Sbjct: 460 SESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616 HSP 2 Score: 21.9422 bits (45), Expect = 3.288e-25 Identity = 7/19 (36.84%), Postives = 11/19 (57.89%), Query Frame = -3 Query: 636 TGYFVLMSNIYAASNKWRE 692 T ++ +SN YA S W + Sbjct: 441 TSAYIALSNAYAVSGGWED 459
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 7.222e-25 Identity = 48/149 (32.21%), Postives = 90/149 (60.40%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 ++R M+N ++ +S I+ + + F+ + +P ++Y ++ + E+K +GY+PD SC D+ D ++E +L H+EKLA+ +G++ A I+V KN +C+D H+ +++S + R+I++++ R HHF G CSCND W Sbjct: 620 RIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768 HSP 2 Score: 22.3274 bits (46), Expect = 7.222e-25 Identity = 6/17 (35.29%), Postives = 13/17 (76.47%), Query Frame = -3 Query: 633 FVLMSNIYAASNKWREV 683 +++M N+Y+ N+W +V Sbjct: 602 YMMMINLYSNLNRWEDV 618
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 4.580e-24 Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEI-KMAGYMPDLSCAL-HDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 ++R M+ + +K +S +E+ + F DR + +EV++ ++ + + ++AG M C +V REH SE+LA+AFGI+N P I V KNLRVC DCH + +S I R+ +VRDA+RFH+F+ G CSC DYW Sbjct: 481 RIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM---DCDRGEEVSSTTREH-----SERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623 HSP 2 Score: 25.409 bits (54), Expect = 4.580e-24 Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = -3 Query: 639 GYFVLMSNIYAASNK----WR 689 GY+VLMSNIY+ S WR Sbjct: 461 GYYVLMSNIYSDSKNQEGIWR 481
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24 Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = -2 Query: 184 YMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 459 Y+PD LHD++ E +E L YHSE+LA+A+GI+ P + + KNLRVC DCH+ + +S I R +IVRD RFHHF+ G CSC DYW Sbjct: 488 YVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23 Identity = 61/168 (36.31%), Postives = 86/168 (51.19%), Query Frame = -2 Query: 190 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND 693 Y+I N+ Y C K K+R MK GL A S +E + F + D+ +P KE+ +E ++ G + D + R+ + HSE+ A+AFG++N P I VTKNL +C +CH +FIS RR+I VRDA FHHF+ G CSC D Sbjct: 701 YYILLCNL-YADCGK-WREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23 Identity = 53/147 (36.05%), Postives = 84/147 (57.14%), Query Frame = -2 Query: 184 DMKNKGLKKPAAFSVIEYG--KDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 618 D++ + LKK + I +G +Q F D P E+++ + ++ + + GY+ + ALHD++ E +E +L HSE++A A ++N P V KNLRVC DCH+A + +S I R++I RD RFH + G C+C DYW Sbjct: 472 DVEKESLKKRSG---ILHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22 Identity = 65/157 (41.40%), Postives = 86/157 (54.78%), Query Frame = -2 Query: 184 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADR---VNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAV----AFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633 G RE KGLKK A S +E +++ F + + + P +E K+ E E GY+ L LHD++DE +E L HSEKLA+ A G +N + I+V KNLRVC DCH + +S I + +VRDA RFH FE G CSC DYW Sbjct: 536 GNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLRE--ELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689 The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bpback to top |