FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = -2
Query:  184 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 693
            Y++  AN+ Y    K   +  +LR+ +  +GL+K    S IE    +  F   D  NP  + +   +  +   +   GY P    AL D E+ ++E  L  HSEKLA+A GI++     +I+VTKNLRVC DCH   +F+S + RR+I++RD+NRFH F+ G CSC  +W
Sbjct:  704 YYVLMANI-YAEAEK-WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.493e-25
Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMP-DLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R+ +++  L+    +S IE G  +  F   D+++P    +Y ++  +     +AGY P D +     + D         HSEKLA+A+G+M  T    +++TKNLRVC DCHS  +++S  + R+IIVRD  RFHHF  G CSCNDYW
Sbjct:  433 MRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581          

HSP 2 Score: 22.7126 bits (47), Expect = 1.493e-25
Identity = 10/27 (37.04%), Postives = 18/27 (66.67%), Query Frame = -3
Query:  615 HTGYFVLMSNIYAASNKWREVGS*EKI 695
            + G +VLM++IY+A+N  +   S  K+
Sbjct:  410 NAGDYVLMTSIYSAANDAQAFASMRKL 436          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 56/152 (36.84%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  184 EDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREH-MLNYHSEKLAVAFGIMNLTPEA-----VIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 621
            ++M+   ++K    S  E G  +  F +  R  P  + VY++++ +   +K  GY+P++  A  D+EDE++E   L +HSEKLA+AF +M     +     +IQ+ KN R+C DCH+  +  S +  ++I++RD+NRFHHF+  +CSCNDYW
Sbjct:  594 KEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.288e-25
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGY------MPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636
            S  LR +MK  G  K  A S IE    +  FH  D       E+ + ++ +   +K  G+      +   S    DV++E ++ M++ H E+LA+A+G+++L   + I++  NLR+C DCH AF+ IS I  R+I+VRD NRFH F+ G+C+C DYW
Sbjct:  460 SESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616          

HSP 2 Score: 21.9422 bits (45), Expect = 3.288e-25
Identity = 7/19 (36.84%), Postives = 11/19 (57.89%), Query Frame = -3
Query:  636 TGYFVLMSNIYAASNKWRE 692
            T  ++ +SN YA S  W +
Sbjct:  441 TSAYIALSNAYAVSGGWED 459          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.222e-25
Identity = 48/149 (32.21%), Postives = 90/149 (60.40%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R  M+N  ++    +S I+  + +  F+   + +P   ++Y ++  +  E+K +GY+PD SC   D+ D ++E +L  H+EKLA+ +G++     A I+V KN  +C+D H+  +++S +  R+I++++  R HHF  G CSCND W
Sbjct:  620 RIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768          

HSP 2 Score: 22.3274 bits (46), Expect = 7.222e-25
Identity = 6/17 (35.29%), Postives = 13/17 (76.47%), Query Frame = -3
Query:  633 FVLMSNIYAASNKWREV 683
            +++M N+Y+  N+W +V
Sbjct:  602 YMMMINLYSNLNRWEDV 618          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.580e-24
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEI-KMAGYMPDLSCAL-HDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R  M+ +  +K   +S +E+   +  F   DR +   +EV++ ++ +   + ++AG M    C    +V    REH     SE+LA+AFGI+N  P   I V KNLRVC DCH   + +S I  R+ +VRDA+RFH+F+ G CSC DYW
Sbjct:  481 RIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM---DCDRGEEVSSTTREH-----SERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623          

HSP 2 Score: 25.409 bits (54), Expect = 4.580e-24
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = -3
Query:  639 GYFVLMSNIYAASNK----WR 689
            GY+VLMSNIY+ S      WR
Sbjct:  461 GYYVLMSNIYSDSKNQEGIWR 481          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = -2
Query:  184 YMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 459
            Y+PD    LHD++ E +E  L YHSE+LA+A+GI+   P   + + KNLRVC DCH+  + +S I  R +IVRD  RFHHF+ G CSC DYW
Sbjct:  488 YVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 61/168 (36.31%), Postives = 86/168 (51.19%), Query Frame = -2
Query:  190 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND 693
            Y+I   N+ Y  C K      K+R  MK  GL   A  S +E    +  F + D+ +P  KE+   +E    ++   G       +  D  +  R+ +   HSE+ A+AFG++N  P   I VTKNL +C +CH   +FIS   RR+I VRDA  FHHF+ G CSC D
Sbjct:  701 YYILLCNL-YADCGK-WREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 53/147 (36.05%), Postives = 84/147 (57.14%), Query Frame = -2
Query:  184 DMKNKGLKKPAAFSVIEYG--KDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 618
            D++ + LKK +    I +G    +Q F   D   P   E+++ + ++ + +   GY+ +   ALHD++ E +E +L  HSE++A A  ++N  P     V KNLRVC DCH+A + +S I  R++I RD  RFH  + G C+C DYW
Sbjct:  472 DVEKESLKKRSG---ILHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 65/157 (41.40%), Postives = 86/157 (54.78%), Query Frame = -2
Query:  184 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADR---VNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAV----AFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633
            G  RE    KGLKK A  S +E  +++  F + +    + P  +E  K+ E    E    GY+  L   LHD++DE +E  L  HSEKLA+    A G +N   +  I+V KNLRVC DCH   + +S I +   +VRDA RFH FE G CSC DYW
Sbjct:  536 GNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLRE--ELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP320_ARATH1.214e-2537.65Pentatricopeptide repeat-containing protein At4g18... [more]
PP284_ARATH1.493e-2538.26Pentatricopeptide repeat-containing protein At3g56... [more]
PP114_ARATH2.071e-2536.84Pentatricopeptide repeat-containing protein At1g71... [more]
PP313_ARATH3.288e-2536.94Pentatricopeptide repeat-containing protein At4g15... [more]
PP297_ARATH7.222e-2532.21Pentatricopeptide repeat-containing protein At4g01... [more]
PP223_ARATH4.580e-2437.75Putative pentatricopeptide repeat-containing prote... [more]
PP153_ARATH6.662e-2451.09Pentatricopeptide repeat-containing protein At2g15... [more]
PPR45_ARATH9.619e-2336.31Pentatricopeptide repeat-containing protein At1g15... [more]
PP170_ARATH9.619e-2336.05Pentatricopeptide repeat-containing protein At2g25... [more]
PP232_ARATH2.799e-2241.40Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
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