FC868864
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21 Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = -2 Query: 184 DRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 534 D P +E+Y ++S+ + GY+P ALHDV+ E ++ L H+E+ A ++ ++I+V KNLRVC DCH+A + +S I R++I RDA RFHH + G CSC +YW Sbjct: 421 DISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.276e-21 Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = -2 Query: 184 MKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL--TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 615 M + LKK + S I+ I F D+ +P +E+Y+K++ + M G M C + E RE +L+ HSE+LA+AFG++++ A I+V KNLR C DCH + +S + +I++RD+ RFHHF+ G CSCNDYW Sbjct: 616 MNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEF--DGFMEGDM--FQCNM----TERREQLLD-HSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752 HSP 2 Score: 23.0978 bits (48), Expect = 4.276e-21 Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = -3 Query: 615 EHTGYFVLMSNIYAASNKWREVGS*EKI 698 E T +VL N+Y + KW E K+ Sbjct: 588 EDTAGYVLPFNLYTWAGKWEEAAEMMKL 615
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18 Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = -2 Query: 184 QMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMA-VEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLT--PEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 648 ++ RS + + ++ LKKP S IE I F T D+ +Y VE M+ ++ + Y +L +E+E RE HSEK A+AFG+++ + + I++ KNLR+C DCH +++S Y I++ D HHF+ G CSC DYW Sbjct: 742 KLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELW-----IEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 894
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15 Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -2 Query: 184 SMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 489 S+ V++ G++P VE+E++E L + S KLA A I+N + V +N+R C D H+ F+ IS I R +I RD ++H ++ G CSC DYW Sbjct: 368 SLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13 Identity = 47/171 (27.49%), Postives = 80/171 (46.78%), Query Frame = -2 Query: 184 YIRCIKQMARSGKLRED------MKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAG----YMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 666 Y+ + A +G+ + M++KG+ + ++ S +E F DR + ++Y E + V +M G Y+ +S + + R + HS +LA FG+++ + V N R+C CH S + RR+I+V D+ FHHF G CSC +YW Sbjct: 637 YVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIY---EVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13 Identity = 34/121 (28.10%), Postives = 61/121 (50.41%), Query Frame = -2 Query: 184 FHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 546 F D +P +Y+ + S+ ++K GY+PD + + + + + E++AV ++ P + I + N+R+ DCH + +S I R +I RDA +H F+ G C CN+ W Sbjct: 355 FRPVDSSHPQMNIIYETLMSLRSQLKEMGYVPDTRYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAITLLTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 47/147 (31.97%), Postives = 68/147 (46.26%), Query Frame = -2 Query: 196 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTAD--RVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSC 630 K R M K L K S +E + F + D RV+ +Y ++ES+ EIK G ++HS K AV +G + +PEA + V KN +C DCH ++ + +KI VRD N+ H F+ G CSC Sbjct: 752 KTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKT-NGIYAEIESIKEEIKRFG------------SPYRGNENASFHSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFKNGECSC 885 The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bpback to top |