FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9411 contig Ccv1_Contig9411:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = -2
Query:  184 DRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 534
            D   P  +E+Y  ++S+   +   GY+P    ALHDV+ E ++  L  H+E+ A     ++    ++I+V KNLRVC DCH+A + +S I  R++I RDA RFHH + G CSC +YW
Sbjct:  421 DISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.276e-21
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = -2
Query:  184 MKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL--TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 615
            M  + LKK  + S I+    I  F   D+ +P  +E+Y+K++    +  M G M    C +     E RE +L+ HSE+LA+AFG++++     A I+V KNLR C DCH   + +S +   +I++RD+ RFHHF+ G CSCNDYW
Sbjct:  616 MNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEF--DGFMEGDM--FQCNM----TERREQLLD-HSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752          

HSP 2 Score: 23.0978 bits (48), Expect = 4.276e-21
Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = -3
Query:  615 EHTGYFVLMSNIYAASNKWREVGS*EKI 698
            E T  +VL  N+Y  + KW E     K+
Sbjct:  588 EDTAGYVLPFNLYTWAGKWEEAAEMMKL 615          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = -2
Query:  184 QMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMA-VEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLT--PEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 648
            ++ RS +  +  ++  LKKP   S IE    I  F T D+       +Y  VE M+ ++ +   Y  +L      +E+E RE     HSEK A+AFG+++ +   +  I++ KNLR+C DCH   +++S  Y   I++ D    HHF+ G CSC DYW
Sbjct:  742 KLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELW-----IEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 894          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  184 SMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 489
            S+ V++   G++P        VE+E++E  L + S KLA A  I+N      + V +N+R C D H+ F+ IS I  R +I RD  ++H ++ G CSC DYW
Sbjct:  368 SLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 47/171 (27.49%), Postives = 80/171 (46.78%), Query Frame = -2
Query:  184 YIRCIKQMARSGKLRED------MKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAG----YMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 666
            Y+  +   A +G+  +       M++KG+ + ++ S +E       F   DR +    ++Y   E + V  +M G    Y+  +S    +   + R +    HS +LA  FG+++      + V  N R+C  CH      S + RR+I+V D+  FHHF  G CSC +YW
Sbjct:  637 YVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIY---EVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/121 (28.10%), Postives = 61/121 (50.41%), Query Frame = -2
Query:  184 FHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 546
            F   D  +P    +Y+ + S+  ++K  GY+PD       +   + +  +  + E++AV   ++   P + I +  N+R+  DCH   + +S I  R +I RDA  +H F+ G C CN+ W
Sbjct:  355 FRPVDSSHPQMNIIYETLMSLRSQLKEMGYVPDTRYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAITLLTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 47/147 (31.97%), Postives = 68/147 (46.26%), Query Frame = -2
Query:  196 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTAD--RVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSC 630
            K R  M  K L K    S +E    +  F + D  RV+     +Y ++ES+  EIK  G                     ++HS K AV +G +  +PEA + V KN  +C DCH     ++ +  +KI VRD N+ H F+ G CSC
Sbjct:  752 KTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKT-NGIYAEIESIKEEIKRFG------------SPYRGNENASFHSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFKNGECSC 885          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP346_ARATH4.041e-2140.17Pentatricopeptide repeat-containing protein At4g32... [more]
PP378_ARATH4.276e-2139.04Pentatricopeptide repeat-containing protein At5g13... [more]
PPR52_ARATH2.452e-1834.18Pentatricopeptide repeat-containing protein At1g19... [more]
PP183_ARATH1.943e-1537.25Pentatricopeptide repeat-containing protein At2g34... [more]
PP350_ARATH1.066e-1327.49Pentatricopeptide repeat-containing protein At4g35... [more]
PPR63_ARATH6.910e-1328.10Pentatricopeptide repeat-containing protein At1g29... [more]
PP430_ARATH1.539e-1231.97Pentatricopeptide repeat-containing protein At5g52... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
back to top