FC868866

Overview
NameFC868866
Unique NameFC868866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868866 vs. ExPASy Swiss-Prot
Match: FENR_CHLRE (Ferredoxin--NADP reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PETH PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 74/176 (42.05%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  176 VVSVRAQVTTEAPAKVEKESKKMEEGVI-VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKL---RLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPMLQSSCL 679
            V + +A               K+EEG + +N +  K P+  +     KITG  A GET H++  TEG++P+ EGQS GVI  G   N+K  ++   RLYSIASS  GD GD +T SLCV+R VY    T +     KG+CSNFLCD  PG E+ +TGP GK +L+P D      C+
Sbjct:   34 VAATKASTAVTTDMSKRTVPTKLEEGEMPLNTYSNKAPFKAKVRSVEKITGPKATGETCHIIIETEGKIPFWEGQSYGVIPPGTKINSKGKEVPTARLYSIASSRYGDDGDGQTASLCVRRAVYVDPETGKEDPAKKGLCSNFLCDATPGTEISMTGPTGKVLLLPADANAPLICV 209          
BLAST of FC868866 vs. ExPASy Swiss-Prot
Match: FENR3_ORYSJ (Ferredoxin--NADP reductase, embryo isozyme, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0147900 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 2
Query:  173 RVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD 655
            ++ S+  Q  +++   V+       +   +N +KPK PY    +   ++ G  APGET H+V    G VPY EGQS GVI  G +  K   P+ +RLYSIAS+  GD  D KT SLCV+R VY    T +     KG+CSNFLCD KPG +V+ITGP GK ML+P D
Sbjct:   58 KIFSMSVQQASKSKVAVKPLELDNAKEPPLNLYKPKEPYTATIVSVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGSPNTVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDPTKKGICSNFLCDSKPGDKVQITGPSGKIMLLPED 224          
BLAST of FC868866 vs. ExPASy Swiss-Prot
Match: FENR2_ORYSJ (Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0784700 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  173 RVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD 655
            +V+ +  Q  +E+   V+    +      +N +KPK PY    +   +I G  APGET H+V    G VPY EGQS G+I  G +  K   PH +RLYSIAS+  GD  D +T SLCV+R VY    T +      GVCSNFLC+ KPG +VK+TGP GK ML+P +
Sbjct:   58 KVLCMSVQQASESKVAVKPLDLESANEPPLNTYKPKEPYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGIIPPGENPKKPGAPHNVRLYSIASTRYGDSFDGRTTSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKVKVTGPSGKIMLLPEE 224          
BLAST of FC868866 vs. ExPASy Swiss-Prot
Match: BOXA_AZOEV (Benzoyl-CoA oxygenase component A OS=Azoarcus evansii GN=boxA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 2
Query:  260 VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYK--EGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDP 658
            VN + P  P       N ++T +DA  +  H+V    G  P+   EGQSIG+I  GVD+  KPH LR+YS+AS   G+      +SL VKR+V  +E G   +GV SN++CDLK G +V++TGP G   LMP  P
Sbjct:  137 VNLYTPANPITATVTGNYRLTAEDASSDIHHIVLDF-GTTPFPVLEGQSIGIIPPGVDEKGKPHLLRMYSVASPRDGERPHYNNLSLTVKRVVEDHE-GNPTRGVASNYVCDLKKGDKVQVTGPYGSTYLMPNHP 269          
The following BLAST results are available for this feature:
BLAST of FC868866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FENR_CHLRE7.226e-3142.05Ferredoxin--NADP reductase, chloroplastic OS=Chlam... [more]
FENR3_ORYSJ7.226e-3144.31Ferredoxin--NADP reductase, embryo isozyme, chloro... [more]
FENR2_ORYSJ9.437e-3143.71Ferredoxin--NADP reductase, root isozyme, chloropl... [more]
BOXA_AZOEV4.694e-2242.96Benzoyl-CoA oxygenase component A OS=Azoarcus evan... [more]

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Properties
Property NameValue
Genbank descriptionC31005G08EF AbioticL1 Citrus clementina cDNA clone C31005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868866 ID=FC868866; Name=FC868866; organism=Citrus clementina; type=EST; length=694bp
GATCTAAATTCTTCTTTATCATCACTTATCAATCATGGCTGCAGTGAGTG
CTGCAGTTTCTCTTCCGACTTCCAAGTCCACTTCGCTTCCAACCAGAACC
TCTATCATCTCTCCTGACAGAATCACCTTCAGAAAGGTTCCATTTTACTA
CAAAGATGTTTCAACTGGAGGGAGAGTGGTTTCTGTCAGAGCTCAGGTTA
CCACTGAGGCTCCTGCTAAGGTTGAGAAAGAGTCCAAGAAAATGGAGGAA
GGTGTTATTGTTAACAAGTTCAAACCTAAGACACCTTACATTGGCAGATG
CCTTTTAAACACTAAGATCACTGGTGATGATGCTCCTGGAGAGACCTGGC
ACATGGTCTTCAGCACTGAAGGAGAGGTTCCCTACAAAGAAGGGCAATCA
ATTGGGGTGATTGCAGATGGTGTTGACAAGAATGCGAAGCCTCACAAACT
GAGATTATACTCCATTGCTAGCAGTGCCCTTGGTGACTTTGGAGACTCCA
AAACTGTTTCTTTATGTGTGAAAAGGCTTGTGTACACCAACGAAAATGGA
GAAATTGTTAAGGGAGTCTGCTCAAATTTCTTGTGTGACTTGAAGCCTGG
GGCTGAAGTGAAAATTACAGGACCTGTTGGGAAAGAAATGCTCATGCCAA
GGGATCCCATGCTACAGTCATCATGCTTGCAACTGGAACTGGAA
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