FC868868

Overview
NameFC868868
Unique NameFC868868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK3_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   90 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +++ R+     + +S++  ++FG     +    S  FL KELP+R+A    E+  LP  L  +P+V  V+ WY+ SF +L  + + +S  D R   +F  ++  I+ RHN+VVP MA G+ + K++   DP I       I  FLDRFY +RI  RMLI
Sbjct:   14 KQIERYSRFSPSPLSIKQFLDFGRDNACEKT--SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPRVLDNFLNVLINIRNRHNDVVPTMAQGVIEYKEKFGFDPFI----SSNIQYFLDRFYTNRISFRMLI 165          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK3_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = 3
Query:   90 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +++ R+     + +S++  ++FG     +    S  FL KELP+R+A    E+  LP  L  +P+V  V+ WY+ SF +L  + + +S  D +   +F Q++  ++ RHN+VVP MA G+ + K++   DP I       I  FLDRFY +RI  RMLI
Sbjct:   14 KQIERYSRFSPSPLSIKQFLDFGRDNACEKT--SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFI----STNIQYFLDRFYTNRISFRMLI 165          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK2_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLI 169          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK2_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLI 169          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK2_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLGTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLI 169          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 3
Query:   93 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            EV  +     + +S++ +++FGS+   +    S+ FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  +L  F + RS  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SSAFLRQELPVRLANILKEIDILPDRLVNTSSVQLVKSWYIQSLMELVEFHE-RSPDDQKVLSDFVDTLITVRNRHHNVVPTMAQGIIEYKDSCTVDPVTN--QNLQYFLDRFYMNRISTRMLM 173          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   93 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            EV  +     + +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTN--QNLQYFLDRFYMNRISTRMLM 173          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++ +++FGS    +    S  FL +ELP+R+A    E++ LP  L+   +V  V+ WY+ S  +L  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+
Sbjct:   35 LSMKQLLDFGSDNACERTSFS--FLRQELPVRLANILKEIDVLPDRLTNTSSVQLVKSWYIQSLMELVEFHE-KSPEDQKNLSDFVDTLIKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QSLQYFLDRFYMNRISTRMLM 173          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   54 KKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSF------PDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRML 548
            ++L   F+ ++  ++  +   + + ++++  ++FG   T K+  +   FL  EL +R+A    E+  LP  L + P+   V +WY +SF DL  F      PDI S      F   ++ I  RH+ VV  MA GL +L++     I  E    I  FLDRFY++RI IRML
Sbjct:    5 RRLLGPFTSAIARKLEHYSQFQPSSLTIQQYLDFGQTGTMKSSFL---FLKNELLVRLANIMQEISLLPPTLLKMPSRRLVSNWYCESFEDLLQFEHAQVEPDIMS-----KFNDQLQTILKRHSRVVETMAEGLIELRESEGVDIASE--RGIQYFLDRFYINRISIRML 165          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 3
Query:   51 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRML 548
            ++KL   F  SL +++  +   + + ++++  ++FG   T  N   S  FL  EL +R+A    E   LP  L + P+   V +WY +SF DL  F    S+ ++   F   +  +  RH +VV  MA GL +L++     I  E    I  FLDRFY++RI IRML
Sbjct:    4 SRKLLGPFVGSLAKKLDYYSQFQPSSLTIQQYLDFGRIGTSAN---SYTFLKNELLVRLANIMQEFTLLPPKLLQMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRHAHVVETMAEGLIELRESDGVDIASE--KGIQYFLDRFYINRISIRML 165          
The following BLAST results are available for this feature:
BLAST of FC868868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PDK3_MOUSE2.380e-1635.22[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_HUMAN2.380e-1634.59[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_RAT3.109e-1638.19[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_HUMAN3.109e-1638.19[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_MOUSE5.303e-1638.19[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE9.046e-1633.97[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_HUMAN2.015e-1533.97[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_SPETR4.489e-1534.72[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK_ASCSU1.706e-1432.16[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDHK2_CAEEL6.483e-1432.93Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]

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Properties
Property NameValue
Genbank descriptionC31005G10EF AbioticL1 Citrus clementina cDNA clone C31005G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868868 ID=FC868868; Name=FC868868; organism=Citrus clementina; type=EST; length=719bp
GGGAATTGGATTTTGTTGTGAGCAAGCAGAAGCCAGAAGCAGCAATGGCT
GCTAAGAAATTGTCGGAGACGTTTTCGAAGAGCTTGATCGAGGAGGTTGG
GCGATGGGGATGCATGAAACAGACAGGTGTGAGCTTGAGGTACATGATGG
AGTTTGGCTCAAAACCTACAGACAAGAATTTGCTAATTTCTGCTCAGTTT
CTTCACAAAGAGCTTCCAATTAGAATCGCCAGACGAGCAATTGAGCTCGA
GACACTTCCTTACGGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTTCGAG
ACTGGTATTTGGACTCATTTCGTGATTTGAGGTCGTTTCCTGACATCAGA
AGTACGAGTGATGAGAGGGATTTTACGCAAATGATTAAGGCGATTAAGGT
GAGGCATAATAATGTGGTGCCCATGATGGCGTTGGGGCTGCAACAATTGA
AGAAAGAGATGGATCCCAAGATTGTTTACGAGGATCTTCATGAGATTCAT
CAGTTTCTGGATCGGTTTTACATGTCTAGGATCGGAATTCGTATGCTTAT
TGCTGGGCCTGAATATCTTGTGTGCACTTCAAATTTGGATGAAACTCAGG
GCAGCATGTAGAATTGCACAATCCCAACCCTCCACCTCATTGTATTGGCT
ACATAGACACAAAAATGTCTCCAGTGCAGGTTGCTAGGAATGCTAGTGAG
CATGCACATTGTGTTTGTC
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