FC868869

Overview
NameFC868869
Unique NameFC868869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: PDF2_ARATH (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.151e-74
Identity = 133/220 (60.45%), Postives = 169/220 (76.82%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WAVV VS+D++R ++     +  RR PSGC++Q++PNGYSKVTW+EH E D+  VH +YKPL+ SG+ FGA+RWVATL+RQCE LA  M++++        +  GR+SMLKLA+RM  +FC+GV AST H W  ++    D DVRVMTRKS+DDPG PPGIVLSAATS W+PV+P+R+F+FLRDE  R EWDILSNGG +QEMAHIA G + GNCVSLLR
Sbjct:  393 WAVVDVSLDSLRPST---PILRTRRRPSGCLIQELPNGYSKVTWIEHMEVDDRSVHNMYKPLVQSGLAFGAKRWVATLERQCERLASSMASNIPGDLSVITSPEGRKSMLKLAERMVMSFCSGVGASTAHAWTTMSTTGSD-DVRVMTRKSMDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRKEWDILSNGGMVQEMAHIANGHEPGNCVSLLR 608          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: ATML1_ARATH (Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.258e-74
Identity = 138/221 (62.44%), Postives = 170/221 (76.92%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAG-GRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WAVV VS+D++R +         RR PSGC++Q++ NGYSKVTWVEH E D+  VH +YKPL+ +G+ FGA+RWVATL RQCE LA  M++++ A D + IT+  GR+SMLKLA+RM  +FC GV AST H W  L+    D DVRVMTRKS+DDPG PPGIVLSAATS W+PV+P+R+F+FLRDE  RSEWDILSNGG +QEMAHIA G+D GN VSLLR
Sbjct:  402 WAVVDVSLDSLRPSP----ITRSRRRPSGCLIQELQNGYSKVTWVEHIEVDDRSVHNMYKPLVNTGLAFGAKRWVATLDRQCERLASSMASNIPACDLSVITSPEGRKSMLKLAERMVMSFCTGVGASTAHAWTTLSTTGSD-DVRVMTRKSMDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNSVSLLR 617          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG7_ARATH (Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana GN=HDG7 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.636e-64
Identity = 119/220 (54.09%), Postives = 155/220 (70.45%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WAVV VS D  R      ++   +  PSGC++QD+ NG SKVTW+EH+EY+ES  H LY+PL+ S +G GA +W+ATLQRQCE   +L+    S+ DHT ++  G +S+LKLAQRM  NF +G+ AS +HKW KL A NV +D R++TRKS+    EP GIVLSAATS+WLPV+ QRLF FL D + R++WDILSNG  M+    + KGQ  G+CVSLLR
Sbjct:  343 WAVVDVSYDINRGNENLKSYGGSKMFPSGCIIQDIGNGCSKVTWIEHSEYEESHTHSLYQPLLSSSVGLGATKWLATLQRQCESFTMLL----SSEDHTGLSHAGTKSILKLAQRMKLNFYSGITASCIHKWEKLLAENVGQDTRILTRKSL----EPSGIVLSAATSLWLPVTQQRLFEFLCDGKCRNQWDILSNGASMENTLLVPKGQQEGSCVSLLR 554          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HGL2_ARATH (Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 4.814e-58
Identity = 104/220 (47.27%), Postives = 151/220 (68.64%), Query Frame = 1
Query:    1 WAVVSVSIDTI-RETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITA-GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSL 654
            WA+V VS+      T    + + CR+LPSGC+++D  NG+SKVTWVEH +   S V  L++ L+ +G+ FGA+ WVATLQ  CE L   M+T+V  +D   +T   GR+S+LK+AQRMT +F   + AS+ H+W K+      +D+RV +RK++ DPGEP G+++ A++S+WLPVSP  LF+F RDE  R EWD LSNG  +Q +A+++KGQD GN V++
Sbjct:  402 WAIVDVSVSVEDSNTEKEASLLKCRKLPSGCIIEDTSNGHSKVTWVEHLDVSASTVQPLFRSLVNTGLAFGARHWVATLQLHCERLVFFMATNVPTKDSLGVTTLAGRKSVLKMAQRMTQSFYRAIAASSYHQWTKITT-KTGQDMRVSSRKNLHDPGEPTGVIVCASSSLWLPVSPALLFDFFRDEARRHEWDALSNGAHVQSIANLSKGQDRGNSVAI 620          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: ROC8_ORYSJ (Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica GN=ROC8 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.023e-56
Identity = 114/223 (51.12%), Postives = 154/223 (69.06%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETS-GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDE-SQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTA-ITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WA+  VS+D  R+   GAP     RRLPSGC++ DM NGYSKVTWVEH E +E S ++ LY+ L++SG  FGA RW+A LQR CE  A L++  V    H A +T  G+RSM+KL+QRM ++FC+ + AS +H+W  L+  N +  VRV   +S D PG+P G+VLSAATS+WLPV    +F F+RDE  RS+WD+LS+G  +QE++ I  G + GNC+SLLR
Sbjct:  353 WAIADVSVDLQRDAHFGAPP-PRSRRLPSGCLIADMANGYSKVTWVEHMEVEEKSPINVLYRDLVLSGAAFGAHRWLAALQRACERYASLVALGVP--HHIAGVTPEGKRSMMKLSQRMVNSFCSSLGASQMHQWTTLSGSN-EVSVRVTMHRSTD-PGQPNGVVLSAATSIWLPVPCDHVFAFVRDENTRSQWDVLSHGNQVQEVSRIPNGSNPGNCISLLR 570          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG3_ARATH (Homeobox-leucine zipper protein HDG3 OS=Arabidopsis thaliana GN=HDG3 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.227e-53
Identity = 105/223 (47.09%), Postives = 146/223 (65.47%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMST---SVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WAVV +SID +         + CRR PSGC++Q+M +GYSKVTWVEH E D++  + +++ LI +G  F A RWV TL RQCE ++ ++ST   SV + DH  +T  G+ SMLK+A+R+   F AG+  +T    + + +G   ED+RVMT KSV+DPG+PPG+++ AATS WLP  P  +F+FLR+   R  WD+L NG  M ++A I  G D  NC SLLR
Sbjct:  393 WAVVDISIDHLLPNIN----LKCRRRPSGCLIQEMHSGYSKVTWVEHVEVDDAGSYSIFEKLICTGQAFAANRWVGTLVRQCERISSILSTDFQSVDSGDHITLTNHGKMSMLKIAERIARTFFAGMTNAT---GSTIFSGVEGEDIRVMTMKSVNDPGKPPGVIICAATSFWLPAPPNTVFDFLREATHRHNWDVLCNGEMMHKIAEITNGIDKRNCASLLR 608          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: FWA_ARATH (Homeobox-leucine zipper protein HDG6 OS=Arabidopsis thaliana GN=HDG6 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.039e-52
Identity = 100/197 (50.76%), Postives = 139/197 (70.56%), Query Frame = 1
Query:   70 RRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            +RLPSG ++ D+ NGYS+VTW+E AEY+ES +HQLY+PLI  G+G GA+RW+ATLQR CE L+ L ST+++      ++A G   ++KLAQRMT N+  G+ + +V KW K+   NV +++  M RK+V++PGE  GIVLSA+TSVWLPV+   LF F+     R EWDIL+N   M+E   I K + HGN +SLL+
Sbjct:  376 KRLPSGLIIDDLSNGYSQVTWIEQAEYNESHIHQLYQPLIGYGIGLGAKRWLATLQRHCESLSTLSSTNLTEIS-PGLSAKGATEIVKLAQRMTLNYYRGITSPSVDKWQKIQVENVAQNMSFMIRKNVNEPGELTGIVLSASTSVWLPVNQHTLFAFISHLSFRHEWDILTNDTTMEETIRIQKAKRHGNIISLLK 571          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG11_ARATH (Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.357e-52
Identity = 110/223 (49.33%), Postives = 143/223 (64.13%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQ-VHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARD--HTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            W VV+VS D  +  S + ++    R PSGC++QDMPNGYSKVTWVEH E +E + VH+LY+ +I  G+ FGA RWV TLQR CE  A L   + S+RD     ++  G+RSM++LAQRM  N+C  V  S     N   +  V E   V  R +     EP G VL AAT+ WLP SPQ +FNFL+DER R +WD+LSNG  +QE+AHI+ G   GNC+S+LR
Sbjct:  377 WIVVNVSYDLPQFVSHSQSY----RFPSGCLIQDMPNGYSKVTWVEHIETEEKELVHELYREIIHRGIAFGADRWVTTLQRMCERFASLSVPASSSRDLGGVILSPEGKRSMMRLAQRMISNYCLSVSRS-----NNTRSTVVSELNEVGIRVTAHKSPEPNGTVLCAATTFWLPNSPQNVFNFLKDERTRPQWDVLSNGNAVQEVAHISNGSHPGNCISVLR 590          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG12_ARATH (Homeobox-leucine zipper protein HDG12 OS=Arabidopsis thaliana GN=HDG12 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 104/224 (46.43%), Postives = 148/224 (66.07%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQ-VHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAG--GRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDE-DVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WA+V+VS +  +  S + ++    R PSGC++QDM NGYSKVTWVEH E++E + +H+++K ++  G+ FGA+RW+ATLQR CE    L+  + S+ D   +     G+RS+++LA RM  NFC  V   T +         +DE  +RV + KS     EP G+VL AATS WLP+SPQ +FNFL+DER R +WD+LSNG  +QE+AHI  G + GNC+S+LR
Sbjct:  357 WAIVNVSYEFPQFISQSRSY----RFPSGCLIQDMSNGYSKVTWVEHGEFEEQEPIHEMFKDIVHKGLAFGAERWIATLQRMCERFTNLLEPATSSLDLGGVIPSPEGKRSIMRLAHRMVSNFCLSV--GTSNNTRSTVVSGLDEFGIRVTSHKSRH---EPNGMVLCAATSFWLPISPQNVFNFLKDERTRPQWDVLSNGNSVQEVAHITNGSNPGNCISVLR 571          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.704e-48
Identity = 98/223 (43.95%), Postives = 140/223 (62.78%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEY--DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WA+V    +   E     + V CRR PSGC++QDMPNGYS+V WVEH E   +E  +  +++  + SG  FGA RW++ LQRQCE LA  ++ +++  D   I T   R +M+KL+QRM   FCA + AS    W  L+    D  +RV TRK+ + PG+P G++L+A ++ WLP + Q++F  L DE+ R + +ILSNGG + E+AHIA G    NC+SLLR
Sbjct:  496 WAIVDFPAEGFEEGLLQASVVRCRRRPSGCIIQDMPNGYSRVVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIA--DLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDT-IRVTTRKNTE-PGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLR 714          
The following BLAST results are available for this feature:
BLAST of FC868869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PDF2_ARATH2.151e-7460.45Homeobox-leucine zipper protein PROTODERMAL FACTOR... [more]
ATML1_ARATH6.258e-7462.44Homeobox-leucine zipper protein MERISTEM L1 OS=Ara... [more]
HDG7_ARATH2.636e-6454.09Homeobox-leucine zipper protein HDG7 OS=Arabidopsi... [more]
HGL2_ARATH4.814e-5847.27Homeobox-leucine zipper protein GLABRA 2 OS=Arabid... [more]
ROC8_ORYSJ2.023e-5651.12Homeobox-leucine zipper protein ROC8 OS=Oryza sati... [more]
HDG3_ARATH1.227e-5347.09Homeobox-leucine zipper protein HDG3 OS=Arabidopsi... [more]
FWA_ARATH1.039e-5250.76Homeobox-leucine zipper protein HDG6 OS=Arabidopsi... [more]
HDG11_ARATH1.357e-5249.33Homeobox-leucine zipper protein HDG11 OS=Arabidops... [more]
HDG12_ARATH3.022e-5246.43Homeobox-leucine zipper protein HDG12 OS=Arabidops... [more]
ROC3_ORYSJ7.704e-4843.95Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC31005G11EF AbioticL1 Citrus clementina cDNA clone C31005G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868869 ID=FC868869; Name=FC868869; organism=Citrus clementina; type=EST; length=661bp
TGGGCTGTCGTTTCTGTTTCCATTGACACCATCCGAGAAACTTCTGGTGC
TCCAGCTTTTGTTAATTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAG
ACATGCCTAATGGCTACTCAAAGGTGACATGGGTTGAGCATGCAGAATAC
GATGAAAGCCAAGTCCACCAACTCTACAAACCCTTGATAATCTCCGGAAT
GGGCTTCGGCGCCCAACGGTGGGTCGCCACCCTTCAAAGACAATGCGAGT
GCCTAGCCATTCTCATGTCCACCAGCGTCTCCGCCAGAGATCACACCGCA
ATAACTGCGGGTGGGCGACGAAGCATGTTGAAGCTAGCACAGAGAATGAC
TGATAATTTCTGCGCTGGGGTGTGCGCTTCAACTGTCCACAAATGGAACA
AGCTCAATGCTGGCAATGTCGATGAAGACGTTAGGGTTATGACCAGAAAG
AGCGTTGACGATCCCGGTGAGCCTCCAGGCATCGTGTTAAGCGCTGCCAC
CTCCGTTTGGCTGCCGGTGTCTCCTCAAAGACTCTTCAATTTTCTACGTG
ATGAGCGGCTTAGAAGCGAGTGGGATATTTTGTCGAACGGTGGGCCCATG
CAGGAGATGGCCCACATTGCTAAAGGACAAGATCACGGCAACTGCGTCTC
CCTTCTACGTG
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