FC868869

Overview
NameFC868869
Unique NameFC868869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.704e-48
Identity = 98/223 (43.95%), Postives = 140/223 (62.78%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEY--DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WA+V    +   E     + V CRR PSGC++QDMPNGYS+V WVEH E   +E  +  +++  + SG  FGA RW++ LQRQCE LA  ++ +++  D   I T   R +M+KL+QRM   FCA + AS    W  L+    D  +RV TRK+ + PG+P G++L+A ++ WLP + Q++F  L DE+ R + +ILSNGG + E+AHIA G    NC+SLLR
Sbjct:  496 WAIVDFPAEGFEEGLLQASVVRCRRRPSGCIIQDMPNGYSRVVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIA--DLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDT-IRVTTRKNTE-PGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLR 714          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: ROC9_ORYSJ (Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.522e-47
Identity = 95/223 (42.60%), Postives = 133/223 (59.64%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKL----NAGNVDEDVRVMTRKSV-DDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVS 651
            WA+V VS D       A + V C + PSGC++++  NG  K+TWVEH       V  LY+ +  SG+ FGA+RWVA LQ QCE +   ++T+V  RD T + T  GRRS+LKLA RMT + C     S    W +     + G  D+D+ + +R++  DDPGEP G++  AA S WLPV+P  L + LRDE  R EWD++  G  +Q   ++AKG+D  NCV+
Sbjct:  455 WAIVDVSFDESETGVHASSAVRCWKNPSGCLIEEQNNGRCKMTWVEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCERMVFAVATNVPTRDSTGVSTLAGRRSVLKLAHRMTSSLCRTTGGSCDMAWRRAPKGGSGGGGDDDIWLTSRENAGDDPGEPQGLIACAAASTWLPVNPTALLDLLRDESRRPEWDVMLPGKSVQSRVNLAKGKDRTNCVT 677          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG5_ARATH (Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana GN=HDG5 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.211e-46
Identity = 92/222 (41.44%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVN--CRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            WA+V   ID+  +       +    +R PSGC++QDMPNGYS+V WVEH E DE  VH+ +   + SGM FGA RW+  LQRQCE +A LM+ +++       +A  RR++++L+QR+   FC  +  +    W  L+    D  VR+ TRK + +PG+P G+VL A ++ WLP S  ++F+ +RD+  +S  ++L NG    E+AHIA G   GNC+SLLR
Sbjct:  464 WAIVDFPIDSFHDQMQPMNTITHEYKRKPSGCIIQDMPNGYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCERIASLMARNITDLG-VISSAEARRNIMRLSQRLVKTFCVNISTAYGQSWTALSETTKD-TVRITTRK-MCEPGQPTGVVLCAVSTTWLPFSHHQVFDLIRDQHHQSLLEVLFNGNSPHEVAHIANGSHPGNCISLLR 682          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG8_ARATH (Homeobox-leucine zipper protein HDG8 OS=Arabidopsis thaliana GN=HDG8 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 79/207 (38.16%), Postives = 123/207 (59.42%), Query Frame = 1
Query:   67 CRRLPSGCVVQDMPNGYSKVTWVEHAEYDES-QVHQLYKPLIISGMGFGAQRWVATLQRQCECLAI--LMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD------EDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            C + PSGC++Q +P+ +SKV W+EH E D     H++Y+ L+  G G+GA+RW+ TL+R CE +A+  + +   S R     T   RRS++KL +RM  NF   +  S          G +D        VRV  R +++  G+PPGIV+SA++S+ +P++P ++F FL++   R +WDILS G  + E+A I  G    NCV++LR
Sbjct:  373 CYKRPSGCLIQALPDAHSKVMWIEHVEVDHKLDTHKIYRDLLSGGSGYGAKRWIVTLERMCERMALSSIQTLPPSDRSEVITTGEARRSVMKLGERMVKNFNEMLTMS----------GKIDFPQQSKNGVRVSIRMNIE-AGQPPGIVVSASSSLAIPLTPLQVFAFLQNLDTRQQWDILSYGTVVNEIARIVTGSSETNCVTILR 568          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG10_ARATH (Homeobox-leucine zipper protein HDG10 OS=Arabidopsis thaliana GN=HDG10 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 84/229 (36.68%), Postives = 131/229 (57.21%), Query Frame = 1
Query:    1 WAVVSVS--IDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEY-DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN----AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            W +  VS  +  +   S AP    C + PSG ++Q +P+G SKVTW+EH E  D+   HQLY+ L+  G G+GA+RW ATLQR CE L++   T     D+  +  T  GRRS++ L +RM  NF     A  +   +KL+    +G  +  VR+  R + +  G+PPG+++ A +S+ LP+ P ++++FLR+  +R +WD+   G P+ E A    G D  N V+ L+
Sbjct:  370 WLIADVSCYLQNVEFESTAPI---CTKRPSGVLIQALPHGRSKVTWIEHVEVTDKVWPHQLYRDLLYGGFGYGARRWTATLQRMCERLSLYSMTDFPPTDYPGVVKTIEGRRSVMSLGERMLKNF-----AWIMKMSDKLDLPQQSGANNSGVRISVRTNTE-AGQPPGLIVCAGSSLSLPLPPLQVYDFLRNLEVRHQWDVHCQGNPVTEAARFVTGPDQKNNVTFLQ 589          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG4_ARATH (Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana GN=HDG4 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 87/222 (39.19%), Postives = 128/222 (57.66%), Query Frame = 1
Query:    1 WAVVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVH-QLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR 660
            W VV   ID I+  S A      RR PSGC++Q M NGYS+VTWVEH E +E  V  ++ +  + SG+ FGA+RW++ L+RQCE +A LM+T+++  D   I +   R++++KL+QRM   FC  +        N        + V++++RK         G+V  A +   LP S Q++F+ LRD +  S+ +IL  G   QE+AHIA G   GN +SLLR
Sbjct:  380 WMVVDFPIDRIKPAS-ATTTDQYRRKPSGCIIQAMRNGYSQVTWVEHVEVEEKHVQDEVVREFVESGVAFGAERWLSVLKRQCERMASLMATNIT--DLGVIPSVEARKNLMKLSQRMVKTFCLNII-------NSHGQAPTKDTVKIVSRKVCG------GLVPCAVSVTLLPYSHQQVFDLLRDNQRLSQLEILFMGSSFQEVAHIANGSHLGNSISLLR 585          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: HDG9_ARATH (Homeobox-leucine zipper protein HDG9 OS=Arabidopsis thaliana GN=HDG9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 78/212 (36.79%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   55 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQV--HQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA---RDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLL 657
            +F  C + PSG ++Q +P+G+SKVTW+EH   ++++V  H+LY+ L+  G G+GA+RW  TL+R CE L  + STSV A    D+  +  T  GR S++ L +RM  NF     A  +   NKL+     E     +R+  R + ++ G+PPG+++ A +S+ LP+ P ++++FL++  +R +WD+L +G P  E A    G +  N VS L
Sbjct:  394 SFPICTKRPSGVLIQALPHGFSKVTWIEHVVVNDNRVRPHKLYRDLLYGGFGYGARRWTVTLERTCERL--IFSTSVPALPNNDNPGVVQTIRGRNSVMHLGERMLRNF-----AWMMKMVNKLDFSPQSETNNSGIRIGVRIN-NEAGQPPGLIVCAGSSLSLPLPPVQVYDFLKNLEVRHQWDVLCHGNPATEAARFVTGSNPRNTVSFL 597          
BLAST of FC868869 vs. ExPASy Swiss-Prot
Match: TF1_ORYSJ (Homeobox-leucine zipper protein TF1 OS=Oryza sativa subsp. japonica GN=TF1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.372e-25
Identity = 65/217 (29.95%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    7 VVSVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLL 657
            V+ VS+D          F  CR++PSG ++Q +     KVT +EH   D++ VH+LY+P  ++G+ FGA+RWVAT+ RQ   +  +     + +    ++  GR++++KLA  +  +F  G+ A+    W  +     ++D+RV  R++ +        +LS   S+ LP+  ++ F+ LR+   R +WD+L +G  ++E   IA+G  + + V++L
Sbjct:  364 VIDVSLDD------GSIFSKCRKMPSGFLIQSIRPNSCKVTAIEHVLADDTGVHELYQP-CMNGLVFGARRWVATMARQSARMRDVHHNKTAPQ----VSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEG-SSSYNAILSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVL 568          
The following BLAST results are available for this feature:
BLAST of FC868869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ROC3_ORYSI7.704e-4843.95Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC9_ORYSJ6.522e-4742.60Homeobox-leucine zipper protein ROC9 OS=Oryza sati... [more]
HDG5_ARATH7.211e-4641.44Homeobox-leucine zipper protein HDG5 OS=Arabidopsi... [more]
HDG8_ARATH1.507e-3538.16Homeobox-leucine zipper protein HDG8 OS=Arabidopsi... [more]
HDG10_ARATH4.385e-3536.68Homeobox-leucine zipper protein HDG10 OS=Arabidops... [more]
HDG4_ARATH1.666e-3439.19Homeobox-leucine zipper protein HDG4 OS=Arabidopsi... [more]
HDG9_ARATH7.740e-3236.79Homeobox-leucine zipper protein HDG9 OS=Arabidopsi... [more]
TF1_ORYSJ5.372e-2529.95Homeobox-leucine zipper protein TF1 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionC31005G11EF AbioticL1 Citrus clementina cDNA clone C31005G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868869 ID=FC868869; Name=FC868869; organism=Citrus clementina; type=EST; length=661bp
TGGGCTGTCGTTTCTGTTTCCATTGACACCATCCGAGAAACTTCTGGTGC
TCCAGCTTTTGTTAATTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAG
ACATGCCTAATGGCTACTCAAAGGTGACATGGGTTGAGCATGCAGAATAC
GATGAAAGCCAAGTCCACCAACTCTACAAACCCTTGATAATCTCCGGAAT
GGGCTTCGGCGCCCAACGGTGGGTCGCCACCCTTCAAAGACAATGCGAGT
GCCTAGCCATTCTCATGTCCACCAGCGTCTCCGCCAGAGATCACACCGCA
ATAACTGCGGGTGGGCGACGAAGCATGTTGAAGCTAGCACAGAGAATGAC
TGATAATTTCTGCGCTGGGGTGTGCGCTTCAACTGTCCACAAATGGAACA
AGCTCAATGCTGGCAATGTCGATGAAGACGTTAGGGTTATGACCAGAAAG
AGCGTTGACGATCCCGGTGAGCCTCCAGGCATCGTGTTAAGCGCTGCCAC
CTCCGTTTGGCTGCCGGTGTCTCCTCAAAGACTCTTCAATTTTCTACGTG
ATGAGCGGCTTAGAAGCGAGTGGGATATTTTGTCGAACGGTGGGCCCATG
CAGGAGATGGCCCACATTGCTAAAGGACAAGATCACGGCAACTGCGTCTC
CCTTCTACGTG
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