FC868871 | Citrus Genome Database

Overview


Name	FC868871
Unique Name	FC868871
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	678

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA2_SOLLC (Catalase isozyme 2 OS=Solanum lycopersicum GN=CAT2 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 8.830e-111
Identity = 185/224 (82.59%), Postives = 204/224 (91.07%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD+++LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF+RDGMKFPDMVHALKPNPKSHIQENWR++DFFSHHPESLHMF+FLFDD+G+P+DYRHM+GSGV+T+ LIN+AGK+ YVKFHWKPTCGVK LLE++AI+VGGANHSHATQDLYDSIA+GNYPEWK  IQIM              VTKT
Sbjct:   69 ASAKGFFEVTHDIAHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRVLDFFSHHPESLHMFTFLFDDIGIPQDYRHMDGSGVHTFTLINRAGKSTYVKFHWKPTCGVKSLLEEKAIRVGGANHSHATQDLYDSIAAGNYPEWKPSIQIMGPEHEDKFDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA1_SOYBN (Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 1.967e-110
Identity = 188/224 (83.93%), Postives = 201/224 (89.73%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD+S+LTCADFLRAPGVQTP+IVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDG+KFPDMVHALKPNPKSHIQENWRI+DFFSHHPESLHMFSFLFDDVG+P+DYRHM+G GVNTY LINKAGKA YVKFHWK T G K LL+DEAI+VGG+NHSHATQDLYDSIA+GNYPEWKLYIQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDISHLTCADFLRAPGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGLKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDVGIPQDYRHMDGFGVNTYTLINKAGKALYVKFHWKTTSGEKSLLDDEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTLDPENEDRLDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA_PHAAU (Catalase OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 3.355e-110
Identity = 190/224 (84.82%), Postives = 201/224 (89.73%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHDVS+LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFFVRDGMKFPDMVHALKPNPK+HIQENWRI+DFFSH PESLHMFSFLFDD+GVP+DYRHM+G GVNTY LINKAGKA YVKFHWK T GVKCLLE+EAIKVGGANHSHATQDL+DSIA+GNYPEWKL+IQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDVSHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNLPVFFVRDGMKFPDMVHALKPNPKNHIQENWRILDFFSHFPESLHMFSFLFDDLGVPQDYRHMDGFGVNTYTLINKAGKAVYVKFHWKTTSGVKCLLEEEAIKVGGANHSHATQDLHDSIAAGNYPEWKLFIQTIDPEHEDKFDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA1_WHEAT (Catalase-1 OS=Triticum aestivum GN=CAT1 PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 5.723e-110
Identity = 183/224 (81.70%), Postives = 200/224 (89.29%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            A+AK FFEVTHDVS+LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFA+KFYTREGN+DLVGNNFPVFF+RDGMKFPDMVHALKPNPK+HIQENWRI+DFFSHHPESLHMF+FLFDD+GVP DYRHM+GSGVNTY L+N+AGKAHYVKFHWKPTCGVK LLE+EA+ VGG NHSHAT+DL DSIA+GNYPEW  YIQ +              VTKT
Sbjct:   69 ATAKGFFEVTHDVSHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFPVFFIRDGMKFPDMVHALKPNPKTHIQENWRILDFFSHHPESLHMFTFLFDDIGVPADYRHMDGSGVNTYTLVNRAGKAHYVKFHWKPTCGVKSLLEEEAVTVGGTNHSHATKDLTDSIAAGNYPEWTFYIQTIDPDYEERFDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA1_CUCPE (Catalase isozyme 1 OS=Cucurbita pepo GN=CAT1 PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 5.723e-110
Identity = 184/224 (82.14%), Postives = 202/224 (90.18%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD++NL+CADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF+RDGMKF   VH LKPNPKSHIQENWRI+DFFSHHPESL+MFSFLFDD+G+P+DYRHM+GSGVNTY LINKAGKAHYVKFHW+PTCGVK LLE++AI+VGG+NHSHATQDLYDSIA+GNYPEWKL+IQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDITNLSCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFTRHVHPLKPNPKSHIQENWRILDFFSHHPESLNMFSFLFDDIGIPQDYRHMDGSGVNTYTLINKAGKAHYVKFHWRPTCGVKSLLEEDAIRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDKYDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA4_SOYBN (Catalase-4 OS=Glycine max GN=CAT4 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.665e-109
Identity = 186/224 (83.04%), Postives = 201/224 (89.73%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD+S+LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFFVRDGMKFPDMVHALKPNPK+HIQENWRI+DFFSH PESLHMF+FLFDD+GVP+DYRHM+G GVNTY LINKAGKA YVKFHWK T G+KCLLE+EAIKVGGANHSHATQDL+DSIA+GNYPEWKL++Q +              VTKT
Sbjct:   69 ASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNLPVFFVRDGMKFPDMVHALKPNPKNHIQENWRILDFFSHFPESLHMFTFLFDDLGVPQDYRHMDGFGVNTYTLINKAGKAVYVKFHWKTTSGIKCLLEEEAIKVGGANHSHATQDLHDSIAAGNYPEWKLFVQTIDPEHEDKFDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA_PEA (Catalase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 3.710e-109
Identity = 185/224 (82.59%), Postives = 201/224 (89.73%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD+S+LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DLVGNNFPVFFV DGM FPDMVHALKPNP++HIQENWRI+DFF + PESLHMFSFLFDDVGVP+DYRHM+G GVNTY LINKAGK+ YVKFHWKPTCGVKCLLE+EAI+VGG+NHSHAT+DLYDSIA+GNYPEWKLYIQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNYDLVGNNFPVFFVHDGMNFPDMVHALKPNPQTHIQENWRILDFFYNFPESLHMFSFLFDDVGVPQDYRHMDGFGVNTYTLINKAGKSVYVKFHWKPTCGVKCLLEEEAIQVGGSNHSHATKDLYDSIAAGNYPEWKLYIQTIDPAHEDRFEFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA1_MAIZE (Catalase isozyme 1 OS=Zea mays GN=CAT1 PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 9.138e-108
Identity = 181/224 (80.80%), Postives = 197/224 (87.95%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHDVS+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF+RDGMKFPDMVHA KPNPK+++QENWRIVDFFSHHPESLHMF+FLFDDVG+P +YRHMEG GVNTY LIN+ GK H VKFHWKPTCGVKCLL++EA+ VGG  HSHAT+DLYDSIA+GNYPEWKLYIQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDVSHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPNPKTNLQENWRIVDFFSHHPESLHMFTFLFDDVGIPLNYRHMEGFGVNTYSLINRDGKPHLVKFHWKPTCGVKCLLDNEAVTVGGTCHSHATKDLYDSIAAGNYPEWKLYIQTIDLDHEDKFDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA2_ORYSJ (Catalase isozyme B OS=Oryza sativa subsp. japonica GN=CATB PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.472e-107
Identity = 181/224 (80.80%), Postives = 196/224 (87.50%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD+S+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF+RDGMKFPDMVHA KP+PK+++QENWRIVDFFSHHPESLHMFSFLFDDVG+P +YRHMEG GVNTY LINK GK H VKFHWKPTCGVKCLL+DEA+ VGG  HSHAT+DL DSIA+GNYPEWKLYIQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKT 292

[Close]

BLAST of FC868871 vs. ExPASy Swiss-Prot
Match: CATA2_ORYSI (Catalase isozyme B OS=Oryza sativa subsp. indica GN=CATB PE=2 SV=2)

HSP 1 Score: 387.497 bits (994), Expect = 3.472e-107
Identity = 181/224 (80.80%), Postives = 196/224 (87.50%), Query Frame = 1

Query:    1 ASAKVFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGVPRDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIASGNYPEWKLYIQIMXXXXXXXXXXXXXXVTKT 672
            ASAK FFEVTHD+S+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF+RDGMKFPDMVHA KP+PK+++QENWRIVDFFSHHPESLHMFSFLFDDVG+P +YRHMEG GVNTY LINK GK H VKFHWKPTCGVKCLL+DEA+ VGG  HSHAT+DL DSIA+GNYPEWKLYIQ +              VTKT
Sbjct:   69 ASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKT 292

The following BLAST results are available for this feature:

BLAST of FC868871 vs. ExPASy Swiss-Prot

BLAST of FC868871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142


Match Name	E-value	Identity	Description
CATA2_SOLLC	8.830e-111	82.59	Catalase isozyme 2 OS=Solanum lycopersicum GN=CAT2...	[more]
CATA1_SOYBN	1.967e-110	83.93	Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1	[more]
CATA_PHAAU	3.355e-110	84.82	Catalase OS=Phaseolus aureus PE=2 SV=1	[more]
CATA1_WHEAT	5.723e-110	81.70	Catalase-1 OS=Triticum aestivum GN=CAT1 PE=2 SV=1	[more]
CATA1_CUCPE	5.723e-110	82.14	Catalase isozyme 1 OS=Cucurbita pepo GN=CAT1 PE=2 ...	[more]
CATA4_SOYBN	1.665e-109	83.04	Catalase-4 OS=Glycine max GN=CAT4 PE=2 SV=1	[more]
CATA_PEA	3.710e-109	82.59	Catalase OS=Pisum sativum PE=2 SV=1	[more]
CATA1_MAIZE	9.138e-108	80.80	Catalase isozyme 1 OS=Zea mays GN=CAT1 PE=2 SV=1	[more]
CATA2_ORYSJ	3.472e-107	80.80	Catalase isozyme B OS=Oryza sativa subsp. japonica...	[more]
CATA2_ORYSI	3.472e-107	80.80	Catalase isozyme B OS=Oryza sativa subsp. indica G...	[more]

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Properties


Property Name	Value
Genbank description	C31005H02EF AbioticL1 Citrus clementina cDNA clone C31005H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868871 ID=FC868871; Name=FC868871; organism=Citrus clementina; type=EST; length=678bp
GCCAGTGCTAAGGTCTTCTTTGAGGTCACCCATGATGTTTCTAACCTTAC
TTGTGCTGATTTCCTTCGAGCCCCAGGGGTTCAGACGCCTGTCATTGTCC
GCTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTGAAACCCTGAGAGAT
CCTCGAGGATTTGCGGTCAAGTTTTACACCAGAGAGGGTAATTTTGATCT
TGTGGGAAACAATTTCCCCGTCTTTTTTGTCCGTGATGGAATGAAATTCC
CTGACATGGTCCATGCGCTTAAACCTAACCCAAAGTCTCACATCCAAGAG
AACTGGAGGATTGTTGACTTCTTCTCCCATCATCCTGAAAGCTTGCACAT
GTTCTCCTTCTTGTTTGATGATGTGGGTGTCCCACGAGATTACAGGCACA
TGGAAGGATCTGGTGTTAACACTTACATGCTGATCAATAAGGCTGGGAAA
GCACATTATGTGAAATTTCATTGGAAACCCACTTGTGGGGTTAAGTGTTT
ATTGGAAGATGAGGCAATCAAGGTTGGAGGAGCCAACCACAGCCATGCTA
CTCAAGATCTTTATGACTCAATTGCATCTGGAAACTATCCTGAGTGGAAA
CTCTACATCCAGATTATGGATCCCGACCATGAGGACNAATTTGACTTTGA
CCCACTTGATGTAACCAAGACTGGCCTG