FC868872

Overview
NameFC868872
Unique NameFC868872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9412 contig Ccv1_Contig9412:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C71A1_PERAE (Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  367 DKKP-VPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            +KKP +P      P+IG+LH LG     + +L ++A + GP+ ++ LG    LIVS  EIA+E   T+D +F++R    A   + Y+     FSPYG YWRQ+R++
Sbjct:   26 EKKPNLPPSPPNLPIIGNLHQLGNLP--HRSLRSLANELGPLILLHLGHIPTLIVSTAEIAEEILKTHDLIFASRPSTTAARRIFYDCTDVAFSPYGEYWRQVRKI 129          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C81E1_GLYEC (Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  373 KPVPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            K +P    + P+IG+LH L  ++P + T   ++EK G +F +  G    ++VS+    ++CFT ND V +NR + L+ + + YNY   G + YG +WR +RR+
Sbjct:   30 KNLPPGPPSLPIIGNLHHL--KRPLHRTFKGLSEKYGHVFSLWFGSRLVVVVSSASEFQQCFTKNDVVLANRPRFLSGKYIFYNYTTLGSTSYGEHWRNLRRI 130          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C71BY_ARATH (Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=CYP71B37 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  349 RHRNSIDKKPVPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            + R    +KP   PG  +P+IG+LH LG  +  + +L ++++K GP+ ++K G    ++VS+ E AK+    +D    +R     P  L YNY    FSP+  YW+++RR+
Sbjct:   23 KKRRQHQRKPPSPPG--FPIIGNLHQLG--ELPHQSLWSLSKKYGPVMLLKFGSIPTVVVSSSETAKQALKIHDLNCCSRPSLAGPRALSYNYLDIVFSPFNDYWKELRRM 129          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C81F1_ARATH (Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  403 PLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFT-TNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            P +GHLHL+  + P +  L   + + GPIF ++ G  R +++++  +A+E FT  ND V S+R   L  + + YN+   G +PYG +WR +RR+
Sbjct:   36 PFVGHLHLM--KPPIHRLLQRYSNQYGPIFSLRFGSRRVVVITSPSLAQESFTGQNDIVLSSRPLQLTAKYVAYNHTTVGTAPYGDHWRNLRRI 127          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C71DF_MENPI (Cytochrome P450 71D15 OS=Mentha piperita GN=CYP71D15 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  370 KKPVPE----PGGA-WPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            +KP P+    PG    PLIGHLHLL G+ P +  L ++A++ GP+  ++LG   ++++S+ E  KE     D   +NR +++   I+ Y+     FSPY  +WRQ+R++
Sbjct:   27 RKPKPQGKFPPGPPKLPLIGHLHLLWGKLPQHA-LASVAKEYGPVAHVQLGEVFSVVLSSREATKEAMKLVDPACANRFESIGTRIMWYDNEDIIFSPYSEHWRQMRKI 134          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C7D95_MENSP (Cytochrome P450 71D95 OS=Mentha spicata GN=CYP71D95 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 35/112 (31.25%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  346 RRHRNSIDKKPVPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            ++ R S  ++ +P      PL+GHLHLL G+ P +  + ++A+K GP+  ++LG   ++++S+ E  KE     D   ++R +++   I+ Y+     FSPY  +WRQ+R++
Sbjct:   23 KQWRKSESRQNLPPGPPKLPLVGHLHLLWGKLPQHA-MADMAKKYGPVTHVQLGEVFSVVLSSREATKEAMKLLDPACADRFESIGTRIMWYDNDDIIFSPYSDHWRQMRKI 133          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C7D95_MENGR (Cytochrome P450 71D95 OS=Mentha gracilis GN=CYP71D95 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 35/112 (31.25%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  346 RRHRNSIDKKPVPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            ++ R S  ++ +P      PL+GHLHLL G+ P +  + ++A+K GP+  ++LG   ++++S+ E  KE     D   ++R +++   I+ Y+     FSPY  +WRQ+R++
Sbjct:   23 KQWRKSESQQNLPPGPPKLPLVGHLHLLWGKLPQHA-MADMAKKYGPVTHVQLGEVFSVVLSSREATKEAMKLLDPACADRFESIGTRIMWYDNDDIIFSPYSDHWRQMRKI 133          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C75A6_CAMME (Flavonoid 3',5'-hydroxylase OS=Campanula medium GN=CYP75A6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  382 PEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            P P G WP+IG L LLG     +V+L ++A K GPI  +KLG    ++ SN + A+    T+D  FSNR     P  L YN     F+ YGP W+ +R+L
Sbjct:   40 PGPTG-WPIIGALPLLGTMP--HVSLADMAVKYGPIMYLKLGSKGTVVASNPKAARAFLKTHDANFSNRPIDGGPTYLAYNAQDMVFAEYGPKWKLLRKL 136          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C71C4_MAIZE (Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  379 VPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGP-IFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRLHTGGSLN 702
            +P P    P+IGHLHL+G     YV+L  +A + GP + +++LG    ++VS+  +A+    T D VFS+R ++L  +I+ Y      F+PYG ++R+ R+L T   LN
Sbjct:   68 LPSPPMKLPIIGHLHLMGDIP--YVSLAALATRYGPDLMLLRLGAVPTVVVSSPRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLN 174          
BLAST of FC868872 vs. ExPASy Swiss-Prot
Match: C71BV_ARATH (Cytochrome P450 71B34 OS=Arabidopsis thaliana GN=CYP71B34 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  343 SRRHRNSIDKKPVPEPGGAWPLIGHLHLLGGQKPAYVTLGNIAEKCGPIFMIKLGMHRALIVSNWEIAKECFTTNDKVFSNRIKALAPEILGYNYAMFGFSPYGPYWRQIRRL 681
            + ++R +  + P   PG   P+IG+LH LG  +  + +L  +++K GP+ ++KLG    +IVS+ E AK+    +D    +R        L YNY    FSPY  YW+++R+L
Sbjct:   21 NHKNRRNYQRTPPSPPG--CPIIGNLHQLG--ELPHQSLWKLSKKYGPVMLLKLGRVPTVIVSSSETAKQALKIHDLHCCSRPGFAGARELSYNYLDIAFSPYDDYWKEVRKL 129          
The following BLAST results are available for this feature:
BLAST of FC868872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
C71A1_PERAE7.225e-1338.68Cytochrome P450 71A1 OS=Persea americana GN=CYP71A... [more]
C81E1_GLYEC1.609e-1234.95Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata ... [more]
C71BY_ARATH3.586e-1233.33Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=C... [more]
C81F1_ARATH4.683e-1236.17Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CY... [more]
C71DF_MENPI6.116e-1235.78Cytochrome P450 71D15 OS=Mentha piperita GN=CYP71D... [more]
C7D95_MENSP1.363e-1131.25Cytochrome P450 71D95 OS=Mentha spicata GN=CYP71D9... [more]
C7D95_MENGR1.780e-1131.25Cytochrome P450 71D95 OS=Mentha gracilis GN=CYP71D... [more]
C75A6_CAMME1.780e-1141.00Flavonoid 3',5'-hydroxylase OS=Campanula medium GN... [more]
C71C4_MAIZE1.780e-1136.70Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 S... [more]
C71BV_ARATH1.780e-1133.63Cytochrome P450 71B34 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005H03EF AbioticL1 Citrus clementina cDNA clone C31005H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868872 ID=FC868872; Name=FC868872; organism=Citrus clementina; type=EST; length=722bp
GCCCCGGGGAGGGATAAAAATAAACTTACTCTCTTTATCAATTTTGATTT
TGTGCACAAGTTTCCTCGTTCAATTTGCCAAGTCCAATTTTGTGTGCAAA
TATCATGTGCAATTAAATAGCTTTTTCCATTAGGTTATGTTTACTATCCC
AGAGACACCGATATAATTATCCTTGAATCGGGTTTACAGCTCATGTATTT
ATTTGATCCAACTTTCCTTCTACCACTTGGAACCTCGGAGAAAGTTTGGT
TAATGGACGGTACTCATGTTCCTTTCACACCAACTGTTTTTATTACTGGC
TTTTTCACTTTGTTTTTGCTTGTTTACTCTCTACTATGGTTATCAAGACG
GCACAGAAACTCAATCGACAAGAAACCGGTGCCGGAGCCTGGTGGTGCAT
GGCCTTTGATTGGTCACCTCCACCTGTTAGGGGGCCAAAAACCAGCTTAT
GTCACCTTGGGCAACATCGCCGAAAAGTGCGGTCCGATCTTCATGATCAA
GCTGGGTATGCATAGAGCTTTGATTGTTAGCAACTGGGAGATTGCTAAAG
AGTGCTTCACTACAAATGATAAAGTTTTTTCCAACCGCATAAAAGCTCTA
GCACCAGAGATCTTGGGCTACAACTACGCCATGTTTGGCTTCAGCCCTTA
CGGTCCTTACTGGCGCCAAATCCGCAGATTGCACACTGGAGGGTCTCTAA
ATCACGCCTGGAATGCTGAACA
back to top