FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACFR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis GN=dxr PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_HAEPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 54/127 (42.52%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            +LGSTGSIG  TL +V  + ++++V AL  G N+ L+ +Q ++++P+ VA+ +E    ++KE L  +  K E+LAG++ + E A HP+   V+  IVG AGL PT++A++AGK + LANKE+L+  G
Sbjct:    6 ILGSTGSIGKSTLSVVDNNPEQYQVFALVGGKNVELITEQCQQYQPRFVALDDEQAAAKLKENLTALGLKIEVLAGQKAIYELASHPEVDMVMAAIVGAAGLLPTLSAVQAGKKVLLANKESLVTCG 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MANSM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dxr PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 52/127 (40.94%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            +LGSTGSIG  TL ++  + +K+   AL  G N+ L+ +Q  +F+P+  A+ +E+   ++ E L +  +K ++LAG++ + E A HP+A  V+  IVG AGL PT++A++A K + LANKETL+  G
Sbjct:   19 ILGSTGSIGKSTLSVIEHNPEKYHAFALVGGRNVDLMVEQCVKFQPEFAALDDENAAKQLAEKLKSAGKKTKVLAGQKAICELAAHPEADQVMAAIVGAAGLLPTLSAVQASKTVLLANKETLVTCG 145          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SERP5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Serratia proteamaculans (strain 568) GN=dxr PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K +++LGSTGS+GT TL +V E+ D+F + AL AG N+ ++A Q   F+P   A+ +E    E++  LA      E++AGEQ   E A   D   V   IVG AGL PT+AAI AGK + LANKE+L+  G
Sbjct:    2 KQLTILGSTGSVGTSTLAVVRENPDRFAIKALVAGRNVAVMAQQCIEFRPAYAAMADEGAARELRILLAENGIATEVMAGEQAACELAALDDVDQVTAAIVGAAGLLPTLAAIRAGKQVLLANKESLVTCG 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SALTY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella typhimurium GN=dxr PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCG 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SALPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella paratyphi A GN=dxr PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCG 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SALCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella choleraesuis GN=dxr PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCG 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PASMU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pasteurella multocida GN=dxr PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K I +LGSTGSIGT TL ++  + DK++V AL  G N+ L+  Q   F+P   A+ ++     + E L   + +  +LAG+Q + E A HP+A  V+  IVG AGL PT++A++AGK + LANKE L+  G
Sbjct:    8 KKIVILGSTGSIGTSTLSVITHNPDKYQVFALVGGRNVELMFQQCLTFQPSFAALDDDVAAKMLAEKLKAHQSQTTVLAGQQAICELAAHPEADMVMAAIVGAAGLLPTLSAVKAGKRVLLANKEALVTCG 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_HALOH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dxr PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 55/134 (41.04%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            K + VLGSTGSIGTQTL++++  ED++ ++AL+A  +  L+  Q ++FKP+ + + NE    E+K  L+++    E+L+G +G+I  +   +A  V+  +VG  GLKPTVAA+++G  + LANKE+L+ GG  +
Sbjct:    3 KKLVVLGSTGSIGTQTLEVLSHLEDQWEILALSANKSTGLIEKQARKFKPRYLVMMNERAALELKHRLSDMSS--EVLSGMEGLITISSLEEADLVINALVGAVGLKPTVAALQSGNTLGLANKESLVIGGEII 134          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_BACFR4.785e-2544.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFN4.785e-2544.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HAEPS8.163e-2542.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MANSM1.066e-2440.941-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SERP51.392e-2445.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALTY2.375e-2444.271-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALPA2.375e-2444.271-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALCH2.375e-2444.271-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PASMU2.375e-2442.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HALOH2.375e-2441.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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