FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOAB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium acetobutylicum GN=dxr PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 56/134 (41.79%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            K IS+LG+TGSIGTQTLD++    + F+++A++A SN   + + +  FKP++V + ++   +++ +     + K  +  G +   E A + D+  VVT IVG  GL PT+ AI+AGKDIALANKETL+  G  V
Sbjct:    2 KNISILGATGSIGTQTLDVIRNDSEAFKLLAVSAHSNFKKMIEIIDEFKPELVVMVDKLAYNKVLDYCCEKKLKTSVKVGYEAFNEVASYKDSNIVVTSIVGMIGLIPTLEAIKAGKDIALANKETLVVAGELV 135          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOBM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 54/138 (39.13%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LG+TGSIGTQTLD++ +  ++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A
Sbjct:    2 KNITILGATGSIGTQTLDVIRKGNEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCVDSKIDTKVLKGMEGMIYISTLEEINTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKA 139          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            K I +LG+TGSIG QTLD++  H+DKFR+ A+  G N    A+ ++ FKP+ V V +E   + +K+   +   K  I  GE+ +IEAA  P+A  VV  +VG  GL PT+ A+E  K IALANKETL+  G  V
Sbjct:    2 KNICLLGATGSIGEQTLDVIKAHDDKFRLTAMTFGKNAEKAAEIIETFKPKYVGVGDEHTYETLKQHSFSYTFKTGI--GEEALIEAAVIPEADIVVNALVGSVGLLPTLKAMEHKKTIALANKETLVTAGHIV 133          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_METCA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Methylococcus capsulatus GN=dxr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL-ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            K I +LGSTGSIG  TLD++A H D++RVVAL+A  N+  L +Q +  +P+  AV        ++E L A      E+LAG + + + A  P+  +V+  IVG AGL PT+AA  AGKD+ LANKE L+  GP  +
Sbjct:    2 KGICILGSTGSIGVSTLDVLARHPDRYRVVALSANGNVDRLFEQCRAHRPRYAAVIRAEAAACLRERLMAAGLGGIEVLAGPEALEQIASLPEVDSVMAAIVGAAGLLPTLAAARAGKDVLLANKEALVMSGPLFM 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOCE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            K IS++GSTGSIG QTL+  A      +V AL+A SNI LL  QV  FKP VV+V N  L  E+   L       E+L G+ G+     H +A TVVT +VG AGL PT+ AI   K+IALANKETL+  G  V+
Sbjct:    3 KIISIIGSTGSIGRQTLE--AAKNLGIKVAALSANSNIDLLEKQVHEFKPDVVSVGNSELAKEMSNRLQGFGI--EVLWGQDGMKRVVEHSEADTVVTSVVGTAGLIPTIHAIRHKKNIALANKETLVTAGQLVM 133          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOBH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 54/138 (39.13%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSDKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKA 139          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOB1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 54/138 (39.13%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSDKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKA 139          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_ACIBC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain ACICU) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 58/138 (42.03%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + ++ E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIV-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAA 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_NITMU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            +++LGSTGSIG  TLD+VA H D+FRVVAL A  ++  + +Q +RF+P+   + +E+  + ++  +       E+L G   + + A  PD  TV+  IVG AG++PT AA   GK + LANKET++  G
Sbjct:    7 LTILGSTGSIGVSTLDVVARHPDRFRVVALTANKSVQKILEQCRRFEPRYAVLLDEASAELLQVEIRRAGLATEVLWGVDSLEKVASLPDVDTVMAAIVGAAGIRPTFAAAATGKRVLLANKETMVMAG 135          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_ACIBY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain AYE) GN=dxr PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 58/138 (42.03%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + +  E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIA-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAA 140          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_CLOAB2.011e-2341.791-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBM2.626e-2339.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACLD2.626e-2345.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_METCA3.429e-2344.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOCE3.429e-2348.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBH3.429e-2339.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB13.429e-2339.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIBC3.429e-2342.031-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NITMU4.479e-2341.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIBY5.850e-2342.031-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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