FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE------EKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++      + PE++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDRPAQCPEMVGGPDGLEVAASWGSAELVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLP 143          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SYNSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9605) GN=dxr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            K ISVLGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL +QV+R +P+VVA+ +  LL E++E L +      + P+++ G  G+  AA    A  VVTGIVGCAGL PT+AAI AGKD+ALANKETLIA GP VLP
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFRVVALTAGRNLKLLVEQVQRHRPEVVALADSDLLPELQERLKDAGVTGADAPQLVGGADGLNVAAAWDSADLVVTGIVGCAGLLPTLAAIRAGKDLALANKETLIAAGPVVLP 141          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 80/142 (56.34%), Postives = 103/142 (72.54%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            K ISVLGSTGSIGTQTL I  E  D+F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSKILKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIP 143          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL------ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL+AG N++LL  Q++R +P VVA+ +++LL E+K+ L         E  P ++ G +G+   A    A  VVTGIVGCAGL PT+AAI AGKD+A+ANKETLIA GP VLP
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRLMALPADTRPEPLPHLVGGPEGLDVVASWDSADLVVTGIVGCAGLLPTLAAIRAGKDLAVANKETLIAAGPVVLP 143          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 79/142 (55.63%), Postives = 103/142 (72.54%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            K ISVLGSTGSIGTQTL I  E  ++F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKKIVKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIP 143          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 76/134 (56.72%), Postives = 101/134 (75.37%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            +LGSTGSIGTQTL+IV+E  DKF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+AGK+IALANKETLIA G  V+P
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKAGKNIALANKETLIAAGSVVIP 134          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 77/138 (55.80%), Postives = 102/138 (73.91%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            K I+VLGSTGSIGTQTL+IV E  +KF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+A K+IALANKETLIA G  V+P
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKASKNIALANKETLIAAGSVVIP 139          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 77/138 (55.80%), Postives = 103/138 (74.64%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            +LGSTGSIGTQTL+I  E  ++FRVVAL AG+N++L+ +Q++R  P+VVA+ + SLL E+K+ L  +  +      P++LAG +G+  AA    A  VV+GIVGCAGL PT+AAI+AGKD+ALANKETLIA  P VLP
Sbjct:    1 MLGSTGSIGTQTLEIAEEFPERFRVVALTAGTNVSLVVEQIQRHHPEVVALADASLLPELKQQLNALPSEQQPPHLPQLLAGPEGLNVAASWDSADLVVSGIVGCAGLLPTLAAIKAGKDLALANKETLIAAAPVVLP 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE---ALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 678
            +LGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL  Q++R +P++VA+ N  LL E+++   AL    ++P+++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRLDALGTDRKRPQLVGGPDGLNIAASWESADLVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLP 135          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_GEOUR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter uraniireducens (strain Rf4) GN=dxr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K +++LGSTGSIG  TLDIVA H DKF+VVAL AG N+ LL  Q++ F PQ+VAV NE L  ++++ L+   + P IL G +G+I AA   DA  VV  IVG AGL PT AAI+AGKDIALANKETL+  G  ++ +
Sbjct:    2 KKLAILGSTGSIGVSTLDIVAAHPDKFQVVALTAGGNLDLLKKQIEEFSPQLVAVLNEELAQKLQQMLSG--KGPAILHGVEGMIAAATAADADMVVAAIVGAAGLVPTAAAIKAGKDIALANKETLVTAGRLIMDM 136          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_SYNS92.071e-3657.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNSC7.870e-3658.571-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM11.753e-3556.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS32.990e-3557.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT5.101e-3555.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMP8.701e-3556.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM53.306e-3455.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM4.318e-3455.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX5.640e-3456.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOUR1.641e-3355.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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