FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PARDP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Paracoccus denitrificans (strain Pd 1222) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIV--AEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            + ISVLG+TGS+G    D++  A   ++FR VAL  G+N+  LA   +  + ++        L +++ ALA      E  AG Q V EAA  P A   ++ IVG AGL P +  +  G  +ALANKETL+A GP V+  A
Sbjct:    2 RSISVLGATGSVGESAFDLLMGAGGPERFRTVALTGGANVARLAQMARALRAELAVTAWPERLADLRAALAG--SGIEAAAGPQAVAEAAARP-ADWTLSAIVGAAGLPPGLEVLNRGGTLALANKETLVAAGPLVMARA 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MYCTU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium tuberculosis GN=dxr PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  262 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MYCTA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  262 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MYCBT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  262 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MYCBP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  262 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MYCBO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis GN=dxr PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  262 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAA 142          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_LEIXX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leifsonia xyli subsp. xyli GN=dxr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            + +LGSTGSIG Q L++VA + D+F+VV L AGS+   LA+Q +RF      VR  +L     E L                    R  DA  V+ GI G  GL PT+AA+E+G+ +ALANKE+LI GG  V
Sbjct:    6 VVILGSTGSIGMQALEVVAANPDRFQVVGLTAGSSAGQLAEQAERF-----GVRETALGAGDSERL-------------------VRSVDADVVLNGITGSVGLGPTLAALESGRTLALANKESLIVGGELV 113          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XYLFT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            ++VLG+TGSIG   LD++A H  +F V  LAAG  +  L    + ++P    + + +L   +++ L       +  AGE  + E        TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  ++
Sbjct:    8 VAVLGATGSIGAAALDVLARHPRQFHVSLLAAGQRVDALLALCRTYRPDHAVIGDATLYTTLRDGLNAAGLATKAYAGEAALAELVASTTCDTVVAAIVGAAGLHSTLAAARAGKRLLLANKESLVLAGMLLM 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XYLF2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xylella fastidiosa (strain M23) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            ++VLG+TGSIG   LD++A H  +F V  LAAG  +  L    + ++P    + + +L   +++ L       +  AGE  + E        TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  ++
Sbjct:    8 VAVLGATGSIGAAALDVLARHPRQFHVSLLAAGQRVDALLALCRTYRPDHAVIGDATLYTTLRDGLNAAGLATKAYAGEAALAELVASTTCDTVVAAIVGAAGLHSTLAAARAGKRLLLANKESLVLAGMLLM 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_AGRVS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  268 PKPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            P+ +++LGSTGSIGT TLD++ +    D+F ++AL    N+ LLA+Q      ++    +E+    +K+ L+      ++ AG  G+ EAA   +A  V+  IVG AGL+PT+ A   G DIALANKE L++ G
Sbjct:    8 PRRLTILGSTGSIGTNTLDVIRQMGGRDRFDIMALTGHGNVALLAEQALVTGARLAVTSDENQYIALKDLLSG--SGIDVAAGSSGLQEAACL-EADWVMAAIVGTAGLQPTLTAAARGADIALANKECLVSAG 138          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_PARDP2.812e-1739.291-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCTU2.812e-1741.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCTA2.812e-1741.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCBT2.812e-1741.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCBP2.812e-1741.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCBO2.812e-1741.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LEIXX3.673e-1742.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XYLFT4.796e-1736.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XYLF24.796e-1736.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AGRVS4.796e-1739.551-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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