FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CHLFF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlamydophila felis (strain Fe/C-56) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA--GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K +S+ GSTGSIG QTL IV      F VVALA+ G+N  L  +Q++ F P +V+V +E L  EI+      +E PEI A   E+G++ AA   +   VV    G   L   + A+++GK +ALANKE L++ G  +   A
Sbjct:    2 KHLSIFGSTGSIGQQTLKIVRSLPHLFNVVALASYGNNKDLFIEQIREFSPSIVSVYDEQLYFEIR------KEFPEIQAFLREEGLMAAATAEEIDMVVAASSGVVALPAIIEAMKSGKVLALANKEVLVSAGEIIKEFA 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XYLFM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xylella fastidiosa (strain M12) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            ++VLG+TGSIG   LD++A H  +F V  LAAG  +  L      ++P    + + +L   +++ L       +  AGE  + E        TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  ++
Sbjct:    8 VAVLGATGSIGAAALDVLARHPRQFHVSLLAAGQRVDALLALCHTYRPDHAVIGDATLYTTLRDGLNAAGLATKAYAGEAALAELVASTTCDTVVAAIVGAAGLHSTLAAARAGKRLLLANKESLVLAGMLLM 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XYLFA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xylella fastidiosa GN=dxr PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            ++VLG+TGSIG   LD++A H  +F V  LAAG  +  L      ++P    + + +L   +++ L       +  AGE  + E        TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  ++
Sbjct:    8 VAVLGATGSIGAAALDVLARHPRQFHVSLLAAGQRVDALLALCHTYRPDHAVIGDATLYTTLRDGLNAAGLATKAYAGEAALAELVASTTCDTVVAAIVGAAGLHSTLAAARAGKRLLLANKESLVLAGMLLM 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_EHRCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia chaffeensis (strain Arkansas) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLA 684
            K +S+ GSTG+IG   +DI+    DK++V  L A SN+ LLA Q K    + V + N  L  E+K+ L     K  + AG+ G++  A   D    +  IVG A L P    I +G K IALANKE+++ GG  +L LA
Sbjct:    2 KTVSIFGSTGAIGQMIIDIIFADLDKYQVKVLVAKSNVQLLAFQAKLINAERVVIANVDLYQELKDLLVGTNIK--VSAGDSGMV-MATSLDVDYAMMAIVGMAALIPMTYLINSGIKVIALANKESIVCGGTLLLSLA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_DEIRA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Deinococcus radiodurans GN=dxr PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLI-----------AGGPFVLPL 681
            ++VLGSTGSIGTQTLD+  +    + V  LAAG N+ LLA+QV+ F+P +V+V + S+L E +E L+ V     ++A       A     A  VV  + G  GL PT AA+EAG+ +ALA KE ++           AGG  V+P+
Sbjct:    6 LTVLGSTGSIGTQTLDVARQRG--YTVGTLAAGRNLDLLAEQVREFRPALVSV-DGSILAEARERLSGVR----VIADPSEAAVA----QADVVVNAMSGLIGLPPTRAALEAGQAVALATKEAMVTSAHLMWEAAAAGGGRVVPV 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_ARTAT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Arthrobacter aurescens (strain TC1) GN=dxr PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  268 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVR--NESLLDEIKEALANVEE----KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            P+ I +LGSTGSIGTQ +D+V     +F VVAL+AG  N+ L+A Q    + Q V +   ++  L ++  A A         PEI  G       A   +   V+ GI G  GL PT+AA+  G  +ALANKE+LI GG  V
Sbjct:    3 PRKIVILGSTGSIGTQAIDVVDAAPHRFEVVALSAGGGNLALIAQQAVHTRAQAVGIAQGDQGALRQLIAAAAAAAGVRNFAPEIFVGPDASTRIAAI-ECDVVLNGITGSIGLAPTLAALGTGATLALANKESLIVGGALV 143          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XANCB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            ++V G+TGSIG   LD++A H ++ R   L+AGS +  L     + +P    + + +L   +++ L +     +  AG+Q +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVQHRPAHAVIADAALYPTLRDGLHDAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAG 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SHEWM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            +LG+TGSIG  TL ++A + + + V AL A +N+  +    ++++P+V  + +E     ++E L+    K E+  GE  +          TV+  IVG AGL PT+AA++AGK + LANKE+L+  G
Sbjct:    6 ILGATGSIGASTLSVIASNPETYSVYALVANTNVDKMMALCEQYRPKVAHMVDEQAAKSLQERLSP-SLKIEVTTGESQLESIVTSSCVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKESLVMSG 131          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XANAC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas axonopodis pv. citri GN=dxr PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  268 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            P+ ++V G+TGSIGT  LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L       +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    6 PRQVAVFGATGSIGTSALDVIARHPERLRASVLSAGSKVDELLALCATHRPAHALIADATLYPALRDGLRARGLATQAHAGAEALDALASSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SHEPW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            +LG+TGSIG  TL++V  + +++RV AL A +N+  + +     +P V  + N     E+K  L + E   E+  GE  ++      +  TV+  IVG AGL  T+AA++AGK + LANKE+L+  G
Sbjct:    6 ILGATGSIGASTLNVVKCNHEQYRVFALVANTNVAKMLEICIEHRPLVAHMVNAQAATELKRLLPS-ELAIEVTTGEDELLSLVSCAEVDTVMAAIVGAAGLPSTLAAVKAGKRVLLANKESLVMSG 131          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_CHLFF6.264e-1740.431-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XYLFM1.069e-1636.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XYLFA1.069e-1636.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRCR1.069e-1639.571-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DEIRA1.823e-1641.101-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ARTAT1.823e-1640.141-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANCB2.380e-1635.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEWM2.380e-1636.221-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANAC4.060e-1635.611-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEPW4.060e-1637.011-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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