FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CAMJD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dxr PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            + GSTGSIG   L + A       + ALA G NI LL +Q+ RFKPQ VA+++      +K           +  G++G+ +         ++  IVG AGLK T+ A E GK+IALANKE+L+  G F+
Sbjct:    3 LFGSTGSIGVNALKLAALKN--IPISALACGDNIALLNEQIARFKPQFVAIKDSKNKHLVKH--------DRVFIGQEGLEQILTECQDRLLLNAIVGFAGLKSTLKAKELGKNIALANKESLVVAGSFL 122          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CAMHC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dxr PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 47/130 (36.15%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            VLGSTGSIGT +L+I  +      V ALA   N+  L  Q+  F P+ V +++E L  ++           +I +GE G+ E     ++ TV+  +VG AGL P++    +GK + L+NKE+L+ GG F+
Sbjct:    3 VLGSTGSIGTNSLEIARKFN--IEVEALACAENVKKLNAQIAEFHPKFVYIKDEKLKSKVAHN--------KIFSGENGICEMLNRCESKTVINALVGFAGLIPSLKIQNSGKILCLSNKESLVVGGKFL 122          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_ANAPZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma phagocytophilum (strain HZ) GN=dxr PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGG 663
            K +SV GSTG IG  T+ I++ + + F+V+AL AGSN++LLA Q K    ++  + +++  +E+K +L        + AG++ V+EAA      T V  I G   L   +  IE+G   IALA+KE+++ GG
Sbjct:    2 KKVSVFGSTGFIGKTTVGILSGNTEDFKVIALVAGSNVSLLAQQAKLLNAEMAVIADDAQYEELKRSLHG--SGIRVAAGKEAVLEAAA-LSVDTAVMAITGIVALSAVMRLIESGVGTIALASKESVVCGG 130          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XANOP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PSYA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            I+VLG+TGSIG  TL I+A     + V AL+    +  L    ++F P+ V V   ++ D+  + L+      E++ G+ G+++ A      TVV  IVG AGL  T+AA  AGK I LANKE L+  G  ++
Sbjct:    7 IAVLGATGSIGDSTLAILAAQPQYYDVYALSGYHRLDKLLALCQQFAPKRVGVPTTAV-DDFAKRLSAAGLDIEVVGGDAGLVDIATDSQTDTVVAAIVGAAGLPSTLAAARAGKRILLANKEALVMAGQVMI 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XANC5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASLLSAGSKVDELLALCATHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALASGDVCDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_THET8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            K + VLGSTGSIG Q L++       + VV LAAG N+  L+ Q+  +KP++VA   ESL  E+K     +       A E   +EA         V  I G AGL PT AA+  GK +ALANKE ++A GP +
Sbjct:    2 KRVVVLGSTGSIGQQALEVCRLRG--YEVVGLAAGKNLEALSRQIALWKPRLVAAE-ESLHKELKARFPGLRLAT---AEEVAALEAE------VAVAAIPGLAGLAPTRAAVRTGKRVALANKEAMVAAGPLL 123          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_THET2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            K + VLGSTGSIG Q L++       + VV LAAG N+  L+ Q+  +KP++VA   ESL  E+K     +       A E   +EA         V  I G AGL PT AA+  GK +ALANKE ++A GP +
Sbjct:    2 KRVVVLGSTGSIGQQALEVCRLRG--YEVVGLAAGKNLEALSRQIALWKPRLVAAE-ESLHKELKARFPGLRLAT---AEEVAALEAE------VAVAAIPGLAGLAPTRAAVRTGKRVALANKEAMVAAGPLL 123          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CAMJR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter jejuni (strain RM1221) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            + GSTGSIG   L + A       + ALA G NI LL +Q+ RFKP+ VA+++      +K           +  G++G+ +         ++  IVG AGLK T+ A E GK+IALANKE+L+  G F+
Sbjct:    3 LFGSTGSIGVNALKLAALKN--IPISALACGDNIALLNEQIARFKPKFVAIKDSKNKHLVKH--------DRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKELGKNIALANKESLVVAGSFL 122          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_XANOR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae GN=dxr PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_CAMJD2.632e-1538.461-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMHC2.632e-1536.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAPZ2.632e-1537.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOP4.489e-1534.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSYA24.489e-1537.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANC55.863e-1534.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THET85.863e-1541.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THET25.863e-1541.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMJR5.863e-1537.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOR7.658e-1534.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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