FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dxr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 68/137 (49.64%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K +S+LGSTGSIG  TLD+V +H D+F +  LA G ++TLLA+Q++ FKP +V+VR+E+  ++++E +   E  PEI  G +G         +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPDRFTITGLAEGHDVTLLAEQIREFKPSIVSVRDEASANQLRELIG--ESGPEIRWGIEGAAVVGEADGSDMVVSAIVGAAGLVPTVRAIKAGKDIALANKETLVVAGQLVSEL 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CHLTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium tepidum GN=dxr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K +S+LGSTGSIG  TLD+V  H ++F + ALA G ++ +L  Q+  F+P +V+VR+E+  + +K  L   + KPEIL G +G  E A    A  VV+ IVG AGL PTV AIEAGKDIALANKETL+  G  V  L
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRRHPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLG--DHKPEILCGLEGAAEVAAVDGADMVVSAIVGAAGLVPTVRAIEAGKDIALANKETLVVAGQLVSDL 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus halodurans GN=dxr PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 70/135 (51.85%), Postives = 95/135 (70.37%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN-VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            K ISVLG+TGSIGTQTLD++A H DKFR+VA++ G N+TL  +Q+ +FKP +V+V    + DE ++ LA+ V E   ++ GE+G+IE A    A  +V  ++G  GL PT+AAIEA K IALANKETL+  G  V
Sbjct:    2 KGISVLGATGSIGTQTLDVLANHRDKFRLVAMSVGKNLTLAEEQIHQFKPPLVSV----MTDEDRKTLASKVPEGTRVVCGEEGLIEVATAEKAEILVNAVIGSVGLAPTLAAIEAKKTIALANKETLVTAGHLV 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PROVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 68/137 (49.64%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            + +S+LGSTGSIG  TLD+V  H++ F VV LA G ++  LA+Q+K F+P +V+VR+E+  DE+K  L    ++PEI+ G +G    A    +  VV+ IVG AGL PT+ AI+AGKDIALANKETL+  G  V  L
Sbjct:    2 RALSILGSTGSIGLSTLDVVRRHKESFSVVGLAEGHDVHALAEQIKEFRPTIVSVRDENAADELK-TLLGPADRPEIVHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTIKAIKAGKDIALANKETLVVAGQLVSDL 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_GEOSM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp. (strain M21) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K +++LGSTGSIG  TLD+VA + D FRVVAL AG+N+ LL  Q++ F+P++V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +
Sbjct:    2 KNLTILGSTGSIGVSTLDVVAAYPDMFRVVALTAGNNLELLKTQIETFRPELVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQM 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PELPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelobacter propionicus (strain DSM 2379) GN=dxr PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K +S+LGSTGSIG  TL+IVA H D+FRV AL AG N+ LLA Q+++F P++ AV  +  +  + +    +E K  I+ G +G+IEAA   +   VV  IVG AGL PT AAI AGKDIALANKETL+  G
Sbjct:    2 KQLSILGSTGSIGVSTLEIVAAHPDRFRVSALTAGKNLELLARQIRQFSPRIAAVAAKEDVPRLAQLCDGLEVK--IVGGVEGLIEAATADETDMVVAAIVGAAGLVPTAAAIRAGKDIALANKETLVTAG 130          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_GEOLS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dxr PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K I++LGSTGSIG  TL+IVA H DKFRV++L+   N+ LLA Q+++F+P++ AV + + +  +KE L+ VE   E+  G +G+  AA  P    VV  IVG AGL PT AAI AG D+ALANKETL+  G   + L
Sbjct:    2 KQIAILGSTGSIGVSTLEIVAAHPDKFRVLSLSGAKNLDLLARQIRQFRPRLAAVADPADIPRLKELLSGVE--VELTGGVEGLCAAATAPGVQMVVAAIVGAAGLVPTAAAIRAGIDVALANKETLVTAGHLFMEL 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_GEOBB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dxr PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.217e-28
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K +++LGSTGSIG  TLD+V  + D FRVVAL AG+N+ LL  Q++ F P +V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +
Sbjct:    2 KNLTILGSTGSIGVSTLDVVKAYPDMFRVVALTAGNNLELLKTQIETFSPDLVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQM 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR1_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ZK / E33L) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 64/138 (46.38%), Postives = 92/138 (66.67%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++    ++    +I  G  G+I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKMFQPRIVSVATKDLADTLR---MHISANTKITYGTDGLIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR1_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D+++     +    +I  G  G I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLR---TRISANTKITHGTDGFIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELA 137          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_PROA23.783e-3049.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLTE4.941e-3051.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACHD4.941e-3051.851-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROVI1.101e-2949.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSM1.101e-2949.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELPD5.462e-2952.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOLS5.462e-2949.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOBB1.217e-2848.911-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCZ1.589e-2846.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACCR1.589e-2846.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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