FC868877
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_HELPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=dxr PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13 Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663 VLGSTGSIG L I + K + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++ A V G +G+ + V+ IVG AGL+ + +++ K +ALANKE+L++ G Sbjct: 3 VLGSTGSIGKNALKIAKKF--KVGIEALSCGKNIALINEQIKVFKPKKVAILDSNDLNGLEPLGAKV------FVGLEGIDAMIEECVSNLVINAIVGVAGLRASFKSLQTNKKLALANKESLVSAG 121
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_HELP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain P12) GN=dxr PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12 Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663 VLGSTGSIG L I + + AL+ G NI L+ +Q+K FKP+ VA+ + + L++++ A V G +G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G Sbjct: 3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPNDLNDLEPLGAKV------FVGLEGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_HELPG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain G27) GN=dxr PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12 Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663 VLGSTGSIG L I + + AL+ G NI L+ +Q++ FKP+ VAV + + L+ ++ A E+ G +G+ + V+ IVG AGL+ + +++ K +ALANKE+L++ G Sbjct: 3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIQVFKPKKVAVLDPNDLNNLEPLGA------EVFVGLEGIDAMIEECASNLVLNAIVGVAGLRASFKSLQRNKKLALANKESLVSAG 121
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_AQUAE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Aquifex aeolicus GN=dxr PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12 Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672 + VLGSTGS+G+QTL + D+ +V + A L Q K++KP+ V S + KE L ++ E + L G++G+ A ++ ++ I G G+KP I+AGK + +NKE+++ G + Sbjct: 3 LGVLGSTGSVGSQTLQVYENFRDEIELVGILANRASEKLLQQAKKYKPKYVV----SYQEPAKEWLESLPEGVKYLKGDEGL--KAIIEESERLMNAISGIYGIKPAYEVIKAGKTLLASNKESILCLGEII 128
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SHEB9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS195) GN=dxr PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12 Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663 +LG+TGSIG TL +++ + + V L A +++ + KP+V + +E+ +++ L ++ G ++ + TV+ IVG AGL PT+ A++AGK + LANKE L+ G Sbjct: 6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSG 131
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SHEB5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxr PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12 Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663 +LG+TGSIG TL +++ + + V L A +++ + KP+V + +E+ +++ L ++ G ++ + TV+ IVG AGL PT+ A++AGK + LANKE L+ G Sbjct: 6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSG 131
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SHEFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxr PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11 Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684 +LG+TGSIG TL ++ + F V L A +++ + +P+ + +E+ E+K L N ++ G + + TV+ IVG AGL PT A++AGK + LANKE L+ G + A Sbjct: 6 ILGATGSIGASTLSVMVNNPADFHVYGLVANASVQKMLALCITHQPEYAHMVDENAAMELKSLLPN-HCVTQVTTGAEALNALVTDSRTDTVMAAIVGAAGLVPTFDAVKAGKRVLLANKEALVMSGELFMHTA 138
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_SHEB2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS223) GN=dxr PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11 Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 283 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663 +LG+TGSIG TL +++ + + V L A +++ + KP+V + +E+ +++ L ++ G ++ + TV+ IVG AGL PT+ A++AGK + LANKE L+ G Sbjct: 6 ILGATGSIGASTLSVISANPLAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSG 131
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CORJK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium jeikeium (strain K411) GN=dxr PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11 Identity = 54/151 (35.76%), Postives = 81/151 (53.64%), Query Frame = 1 Query: 277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQG------------VIEAA--RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684 + VLGSTGSIGTQ L+++A++ ++F +V ++A GS +LA QV+ F LD + A+A+ E E L GE G ++EA + ++ +VG GL T+A + +ALANKE+L+AGG VL A Sbjct: 20 VVVLGSTGSIGTQALEVMADNPERFELVGISAHGSKPDVLAQQVRDFG-----------LDLGRVAVAS-EHTAEWLDGEFGAHCIRGKDSARELVEAVGPELGECDVILNALVGSLGLDATLATLGTKAKLALANKESLVAGGQLVLKAA 158 The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 429
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bpback to top |