FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CHLPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dxr PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 65/138 (47.10%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            + +S+LGSTGSIG  TLD+V +H ++F +  LA G ++ +L  Q++ F P++V+VRN     E+   L N  EKPEI  G +G    A    A  VV+ IVG AGL PT++AI+AGK+IALANKET++  G  V  LA
Sbjct:    2 RSLSILGSTGSIGLSTLDVVRQHPEQFTITGLAEGHDVGMLVKQIREFNPRLVSVRNADAAAELASLLGN--EKPEIFYGIEGAATVAAADGADMVVSAIVGAAGLVPTISAIKAGKNIALANKETMVVAGRLVTDLA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CHLL2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dxr PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K +S+LGSTGSIG  TLD+V +H  KF +  LA G ++ LL +Q+  F+P VV+VR+ +  D++++ L     KPEI  G +G    A    A  VV+ IVG AGL PTV+AI+AGK IALANKETL+  G  V  L
Sbjct:    2 KALSILGSTGSIGLSTLDVVRQHPGKFTITGLAEGHDVGLLNEQINEFRPDVVSVRDAASADQLRKLLGT--HKPEIFYGIEGAATVAAAEGAEMVVSAIVGAAGLVPTVSAIKAGKHIALANKETLVVAGQLVSDL 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_EXIS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dxr PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 62/138 (44.93%), Postives = 93/138 (67.39%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K +S++G TGSIGTQTLD++A + D+F++V+ A G NI +    + R +P++VAV +E++ ++++  L   +  P +L GE G+I  A    A  V+T +VG  GL+PT+AAIEAGK I LANKETL+  G  V+  A
Sbjct:    2 KQVSIIGGTGSIGTQTLDVIAANPDRFQLVSFAFGKNIEVALPWLNRLRPELVAVLDETVKEQLEAVL---DYSPTVLVGEDGLIAVATADQADIVITAVVGAVGLRPTLAAIEAGKSIGLANKETLVTAGHLVMKKA 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PELLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon luteolum (strain DSM 273) GN=dxr PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            + +S+LGSTGSIG  TLD+V +H D+F++V LA G ++ +LA+Q++ F P +V+VR+    + +K  L    + PEI  G +G    A    +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHPDRFKIVGLAEGHDVNMLAEQIREFNPSIVSVRDAGSAELLKTLLGT--DLPEICHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTVKAIKAGKDIALANKETLVVAGQLVSDL 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_EUBR3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dxr PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 68/138 (49.28%), Postives = 95/138 (68.84%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIGTQTLD++ EH D  +VVAL+ G N++L+  Q + FKPQ V+V +E+   +++ +LA+ +   E+  G  G+I  A       VVT IVG  G++PT+AAI+A K IALANKETL+  G  ++PLA
Sbjct:    2 KKISILGSTGSIGTQTLDVIREHGD-MQVVALSCGRNLSLIEKQAREFKPQFVSVSDENDAKKLRTSLADTDI--EVGYGMDGLIRCATIEPCDIVVTAIVGMLGIRPTIAAIKAKKTIALANKETLVTAGHIIIPLA 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_DESPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotalea psychrophila GN=dxr PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 68/138 (49.28%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LG+TGSIGT  L++V +  D++R+VA+AAG NI L A Q++ F P +V+V +E     ++E L     K  IL G  G  E A +P A   ++ IVG AGL PT+AAIEAGKDI LANKETL+  G  V+  A
Sbjct:    2 KKISLLGATGSIGTSVLEVVRKFSDQYRIVAMAAGRNIDLFARQIEEFSPDLVSVLDEEYAHCLQERLGGFRGK--ILWGNAGNEEVAAYPSASITISAIVGAAGLLPTLAAIEAGKDIGLANKETLVMAGKIVMERA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR1_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=dxr1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 63/138 (45.65%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR1_BACAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus anthracis GN=dxr1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 63/138 (45.65%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_THEPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=dxr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+ L
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQMGKDIALANKEVLVTAGQIVMDL 134          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_THEP3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=dxr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+ L
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQRGKDIALANKEVLVTAGQIVMDL 134          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_CHLPD2.711e-2847.101-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLL22.711e-2848.911-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EXIS24.624e-2844.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELLD6.039e-2847.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBR36.039e-2849.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESPS6.039e-2849.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACHK6.039e-2845.651-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACAN6.039e-2845.651-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_THEPX1.030e-2746.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP31.030e-2746.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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