FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_DESHY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain Y51) GN=dxr PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 62/138 (44.93%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKP+++ +  E    E+K+ +A+++   E+++G +G++         TVVT I G  GL+PT+ A++ GKDIALANKETL+AGG  V+  A
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPRIIGLMEEKAARELKQRVADLD--IEVVSGMEGLLRTVTDEVPDTVVTAISGRIGLEPTMEALKVGKDIALANKETLVAGGDLVMGTA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOPE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens GN=dxr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTLDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVM 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSQGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVM 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_DESRM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotomaculum reducens (strain MI-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIG QTL++V    ++  VVALAAG N  L  +Q K +KP +V+++ E     +KE L   + +PEI  G  G++  A   +AV VVT + G  GL PT AAI+A K IALANKETL+A G +V  LA
Sbjct:    3 KQISILGSTGSIGRQTLEVVNSFPEELNVVALAAGRNRELFLEQCKAYKPLLVSLQLEEDALWLKEHLIKEKLRPEIRYGLDGLVAVATCHEAVVVVTALSGAIGLVPTCAAIKASKKIALANKETLVAAGQYVTKLA 140          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_DESAP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulforudis audaxviator (strain MP104C) GN=dxr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 1
Query:  268 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            PK I+VLGSTGSIG Q LD+V  H +KF+VV LAAG N  LLA+Q   F P VV+V +    D+ +     +    E+ AGE G+   A  P A  ++  + G  GL PTV AI++GKD+ALANKETL+  G  V  LA
Sbjct:    2 PKRIAVLGSTGSIGRQALDVVRSHPEKFKVVGLAAGRNWELLAEQAAEFAPGVVSVWSG---DDAERVRVRLGGGVEVHAGEPGLSAVATWPAADILLVAVAGTTGLVPTVEAIQSGKDVALANKETLVVAGELVTELA 137          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K ISVLGSTGSIGTQTL++V  ++D  +V ALAA SNITLL +Q++ F P++V V +     E+K+ ++++E   E  AG  G+I  A    A  VV+ +VG  G+KP + AI  GKDIA ANKETL+  G  ++PL
Sbjct:    2 KIISVLGSTGSIGTQTLEVVRNNKD-LKVSALAASSNITLLEEQIREFHPKLVCVYDREKALELKKRVSDLEVTVE--AGMDGLIACATEESADIVVSAVVGMIGIKPVMEAILRGKDIAFANKETLVTAGHLIMPL 135          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_LAWIP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dxr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  268 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            P+ IS+LGSTGSIGT  LD++  H++ F +VAL  G N+ LLA Q  ++KP  +AV++E+  + +   L  +  KP I  G+QG ++ A  P+  TV++  VG AGL  TVAA + GK I LANKETL+  G  +
Sbjct:   18 PRTISILGSTGSIGTNALDVIKSHKELFHIVALGGGKNVQLLAKQAIQWKPDYLAVQDETSKEALIPLLP-INYKPSIFVGQQGYVKLASLPEVTTVLSAQVGAAGLHGTVAAAKNGKVICLANKETLVLAGKLI 151          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_GEOKA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus kaustophilus GN=dxr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 66/138 (47.83%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LG++GSIGTQTLD++  H D+FR+ A + G NI      +  F P +VAV +    D  K        +  I+ GE+G+IEAA  P A  VVT +VG  GL PT+ AIEAGK IALANKETL+  G  V+  A
Sbjct:    2 KYISILGASGSIGTQTLDVIRAHPDEFRLAAASVGKNIEAARRLIAEFSPSLVAVADR---DAYKVLYREYRGRTTIVYGEEGLIEAAVCPQADVVVTAVVGSVGLVPTLKAIEAGKAIALANKETLVVAGHLVMAAA 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOD6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium difficile (strain 630) GN=dxr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL-ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            K IS+LGSTGSIG QTLD+V ++ DKF +VA++A SNI LL +Q+  FKP+ V V  E+   ++KE L  N+E   E+LAG +G+   +   +   ++T +VG  GL PT+ AI+ G DIALANKETL+  G  V+
Sbjct:    2 KKISILGSTGSIGKQTLDVVRDNRDKFEIVAISANSNIELLLEQIVEFKPKYVTVFEENKALKLKEMLPKNIE--IEVLAGMEGLKIISSLDEVDVLLTAVVGMIGLVPTLCAIKKGIDIALANKETLVTAGELVM 135          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PORGI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis GN=dxr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++ LA
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLA 138          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_DESHY8.721e-2744.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPE1.943e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOP11.943e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESRM2.537e-2649.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESAP2.537e-2648.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPH2.537e-2648.911-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LAWIP3.314e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOKA3.314e-2647.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOD63.314e-2648.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORGI4.328e-2646.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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