FC868877

Overview
NameFC868877
Unique NameFC868877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:143..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_PORG3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++ LA
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLA 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_THETN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter tengcongensis GN=dxr PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 62/137 (45.26%), Postives = 95/137 (69.34%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 681
            K + +LGSTGSIG QTLD+V   +++F +V L   +N++LL+ Q+K F+P+VVAV++E    +++E   N++E  E+L G++G+ E  ++ +A  VV  + G AGL PTV AI+ GK+IALANKE L+  G  V+ L
Sbjct:    2 KKLIILGSTGSIGRQTLDVVRSLKEEFEIVGLTGYNNVSLLSKQIKEFRPKVVAVKDEEKARKLRE---NLDEPIEVLTGKEGLKEIVKY-EADMVVVAVEGIAGLIPTVEAIKLGKNIALANKEVLVTAGEIVMGL 134          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_STRAW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces avermitilis GN=dxr PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 69/139 (49.64%), Postives = 88/139 (63.31%), Query Frame = 1
Query:  283 VLGSTGSIGTQTLDIVAEHEDKFRVVAL-AAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            +LGSTGSIGTQ +D+V  + D+FRV  L AAG  + LLA+Q  R +   VAV  E ++  ++EAL       E  PEILAG     + A   D  TV+ GI G  GL PT+AA+EAG+ +ALANKE+LI GGP V  LA
Sbjct:    2 ILGSTGSIGTQAIDLVLRNPDRFRVTGLSAAGGRVGLLAEQAHRLRVSTVAVAREDVVPVLREALTAQYGPGEPLPEILAGADAATQLAAS-DCHTVLNGITGSIGLAPTLAALEAGRTLALANKESLIVGGPLVKALA 139          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus clausii (strain KSM-K16) GN=dxr PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 61/138 (44.20%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K IS+LGSTGSIGTQTLD++ ++ D+F + ALA G+N+ L  +Q+K F+P++V+V+     ++ +       +  E L GE+G+ E AR+ ++  VVT I G  GL PT++AI+A K +A+ANKETL++ G  V+  A
Sbjct:    2 KQISLLGSTGSIGTQTLDVIRDYPDQFTLSALACGTNLELCRNQIKEFQPKLVSVQRP---EDAQTLAGEFGDSIEFLYGEEGLKEVARYSESDIVVTAITGSIGLLPTLSAIKAKKAVAIANKETLVSAGHLVVSAA 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_HAEDU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Haemophilus ducreyi GN=dxr PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 663
            K I +LG+TGSIG  TL ++  + D+++V AL  G N+ L+A Q  +FKP+  A+ +E     + E L  +    ++L GEQ + E A HPDA  V+  IVG AGL PT+AA++AGK I LANKE+L+  G
Sbjct:    2 KNIVILGATGSIGQSTLSVIEHNPDQYQVFALVGGKNVELMATQCSQFKPKFAALVDEKAAKLLAEQLKALNLTTQVLTGEQAICELAAHPDANIVMAAIVGAAGLLPTLAAVKAGKQILLANKESLVTCG 132          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_CLOPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain SM101 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 675
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GK+IALANKETL+  G  V+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKNIALANKETLVVAGELVM 136          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_MOOTA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dxr PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP--EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I+VLGSTGSIG QTL++VA H  +FRV AL A  N  LLA QV+RF+P++  + +E    E    LA +   P   ILAGE+G++ AA       VV  +VG   LK  +AA+EAGKDIALANKE L+A G  V+  A
Sbjct:    3 KEITVLGSTGSIGRQTLEVVAAHPGRFRVAALVAARNDELLAAQVRRFRPRLAVLLDE----ERARVLAEMVSDPGIRILAGEEGLMAAACLEGVELVVAAMVGIRSLKAILAALEAGKDIALANKEVLVAAGQLVMDRA 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_THERP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 62/132 (46.97%), Postives = 89/132 (67.42%), Query Frame = 1
Query:  277 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 672
            +S+LGSTGSIG QTL++VA H D+FRVVALAA S I  L +QV+ F+P++VA+  ESL     +          +++G  G++EAA +  A  VV  + G +G++PT+AA  AGK IALANKE+++  GP +
Sbjct:    5 VSLLGSTGSIGRQTLEVVAAHPDRFRVVALAARSQIDALQEQVRIFRPELVAIAQESLGISFPDT--------RVVSGPGGLVEAATYETADIVVIALSGNSGIEPTLAAAAAGKTIALANKESVVCAGPLL 128          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACV8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxr PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LGSTGSIGTQ L ++ EH D + V AL A + + LL +Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+  +VG AGL+PT+ AI+AGK IALANKETL+  G  +  LA
Sbjct:    3 KQIAILGSTGSIGTQALQVIEEHPDLYEVYALTANNRVDLLVEQARKFMPEAVVIANEEKYLQLKEALSDLPVK--VYAGADALSQIVESQPIDIVLASMVGYAGLRPTINAIKAGKAIALANKETLVVAGELINALA 138          
BLAST of FC868877 vs. ExPASy Swiss-Prot
Match: DXR_BACTN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides thetaiotaomicron GN=dxr PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 62/138 (44.93%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  271 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 684
            K I++LGSTGSIGTQ L ++ EH D +   AL A + + LL  Q ++F+P+VV + NE    ++KEAL+++  K  + AG   V +         V+T +VG AGLKPT+ AI A K IALANKETL+  G  +  LA
Sbjct:   10 KQIAILGSTGSIGTQALQVIEEHPDLYEAYALTANNRVELLIAQARKFQPEVVVIANEEKYAQLKEALSDLPIK--VYAGIDAVCQIVEAGPVDMVLTAMVGYAGLKPTINAIRAKKAIALANKETLVVAGELINQLA 145          
The following BLAST results are available for this feature:
BLAST of FC868877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_PORG34.328e-2646.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THETN5.653e-2645.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_STRAW5.653e-2649.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSK5.653e-2644.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HAEDU7.383e-2645.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPS7.383e-2644.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MOOTA9.642e-2650.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THERP2.148e-2546.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACV82.805e-2543.481-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACTN4.785e-2544.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC31005H08EF AbioticL1 Citrus clementina cDNA clone C31005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868877 ID=FC868877; Name=FC868877; organism=Citrus clementina; type=EST; length=718bp
GAGATAAAAAGAGGAGAAAAAAAACAGGTTGTTAAAGCTTTGATGGCATT
GAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAA
CCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAG
AGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGC
TCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTC
GTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGT
TCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATT
CAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATC
AGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTA
CTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGAT
TTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGG
TCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTT
GCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATT
GATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAAACATA
AAATTTCTTCCAGCTGAT
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