FC868878

Overview
NameFC868878
Unique NameFC868878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:   98 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVLA +KR  SP
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSP 59          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   62 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVL V+K+  SP
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSP 59          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   62 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVL V+K+  SP
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSP 59          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 2
Query:   98 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS 244
            YDR +  FSP+GRL+QVEYA EA+K G+TA+G+K  +GVVL V+KR++S
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSS 57          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:   98 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            YDRG+  FSP+GRL+QVEYA EA+K G+ ++G++T +G+VLA +KR  SP
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSP 59          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   98 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS 244
            YDR +  FSP+GRL+QVEYA EA+K G+TA+G+K  +G+VL V+KR+ S
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNS 57          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 2
Query:   98 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS 244
            YDR +  FSP+GRLFQVEYA EA+K GSTA+G+K K+GV L  EK++ S
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRS 56          
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 2
Query:   89 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            +T YDR    FSPEG L+QV YA EA+K G T++G+KT EGVV+A EKR   P
Sbjct:    9 QTAYDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGP 61          
The following BLAST results are available for this feature:
BLAST of FC868878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PSMA1_HALVO8.305e-1264.00Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_HALSA1.085e-1156.45Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.085e-1156.45Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA_METB61.850e-1161.22Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_HALWD2.416e-1158.00Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA_METPE3.156e-1159.18Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_PICTO4.122e-1163.27Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_AERPE5.383e-1158.49Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]

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Properties
Property NameValue
Genbank descriptionC31005H10EF AbioticL1 Citrus clementina cDNA clone C31005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868878 ID=FC868878; Name=FC868878; organism=Citrus clementina; type=EST; length=736bp
GAGAAAACTCTCGCTCTAACTCCGTTCCGGTATGAACTCTTAAGCTCAGG
TTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTAT
GATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGA
ATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGA
CGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTG
CTGGTTTGTTTAATTCTTGTTGTGCTTTTTCTTTACTTGTAAATGCTTGG
TCTTGTGTGAGTATATATATCCGTAAATTTCATGCTTCTACAATTCTTTA
GGCATGTGCTTTAATGTACTACAAAGCAAAAAAAGGTCAGTCCCTCAGCA
GGAGGGCAATAAAATGCATATTAAAGGATCATGATTCACATTAATCGTTT
GGATAGAAAAAGGGCAATGTTATTCAAAATAACGACATGTGATTAAGATA
AATAGCTTTTAAAAGCCAAATAGCAACAAACCCAAAGGACAAGCCTGGGC
ATTGATATACCGAAAGCAGATATTCTTCTATGACGATGGAAGCAAATTCT
GCAGCCAACACACATATATCCCCACCATATGTCTTAATTGGGCTGGGATG
TTTACATATTTATGAGATATGTGTATGGTTTTGATGTTACATATTTATGA
GTTTCTGTACAGTCTGAGTCCAGGAATCTAATTTGA
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