FC868880

Overview
NameFC868880
Unique NameFC868880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868880_ssr113 microsatellite FC868880_ssr113:113..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 43/163 (26.38%), Postives = 74/163 (45.40%), Query Frame = 3
Query:  138 ITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSAL 626
            +  + +AL+A+K         LL  +   N+ +C+W G+ CD  S+ V +L++S  NL G I P                   G +P  I    +L +LD ++N L G +   +  +  +  + L NN+ +G +P  +   +P+LK L L  N    +I   L
Sbjct:   26 MNNEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATL-TQIPNLKRLDLAGNHLTGEISRLL 187          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 55/194 (28.35%), Postives = 84/194 (43.30%), Query Frame = 3
Query:  129 SNNITTDQQALLALKDHIIYDPTNLLAH----NWTSNTSVC-TWIGITCDVNSHRVAALDISQFNLQGTIPPQ-XXXXXXXXXXXXXXXXXXGNVPSSIYTM----------------------HTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSAL 626
            S +I +D+QALL           +L+ H    NW S   +C +W GITC  N+ RV AL +    L G +P +                   GN+PS I ++                      H L  LD + N LSG++ + + N++ + ++ L NN  SG +P    N  P LK L L  N  +  +PS++
Sbjct:   22 SADIESDKQALLEF--------ASLVPHSRKLNWNSTIPICASWTGITCSKNNARVTALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHLQGNIPSVILSLPFIRSLYFHENNFSGTIPPVLSHRLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSLSGPIP----NLPPRLKYLNLSFNNLNGSVPSSV 203          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 40/177 (22.60%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  138 ITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            + +D  ALL+L  H    P+++      S+++ C+W+G+ CD     V  L++S + + G   P+                  G++PS +     L+ +D + N  +G++   +  + ++  + L  N   G  P+++ + +PHL+ ++   N  +  IPS +    +  TL L  N
Sbjct:   24 LNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECD-RRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLS-IPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDN 198          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: BRL2_ARATH (Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 3
Query:  288 LDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            +D+S   L GTIPP+                  G +P  I  +  LK L   +NQL+G +    FN S+I  +  T+NR +GE+PK+    L  L  L L  N F  +IP  L KC     L+L  N
Sbjct:  404 IDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDF-GILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTN 529          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 43/163 (26.38%), Postives = 72/163 (44.17%), Query Frame = 3
Query:  138 ITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSAL 626
            +  + +AL+A+K         LL  +   N   C+W G+ CD  S  V +L++S  NL G I                     G +P  I    +L ++DF+ N L G +   +  +  +  + L NN+ +G +P  +   +P+LK L L +N    +IP  L
Sbjct:   28 MNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATL-TQIPNLKTLDLARNQLTGEIPRLL 189          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 39/161 (24.22%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  138 ITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPS 620
            I+ D +ALL+ ++ ++     ++      +   C W G+TCD  + RV AL ++   L+G +PP+                   ++P+S+     L+ +   +N ++G++ S + N+S +  + L+NN  +G +P ++   L  L    +  N    KIPS
Sbjct:   29 ISPDGEALLSFRNGVLASD-GVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASL-GQLKRLTKFNVSNNFLVGKIPS 187          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 52/184 (28.26%), Postives = 85/184 (46.20%), Query Frame = 3
Query:  132 NNITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCT-----WIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            +++ +D  ALL+L  H    P  + A  W  NTS  T     W G+ CD++ + V  L++S   L G +                         S I  + +L  LD + N  SG + S + N +S+  + L+NN FSGE+P +I   L +L  L+LD+N     IP+++    +   L + +N
Sbjct:   25 SSLNSDGLALLSLLKHFDKVPLEV-ASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLG------------------------SEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVP-DIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYN 182          
The following BLAST results are available for this feature:
BLAST of FC868880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERL1_ARATH2.019e-1126.38LRR receptor-like serine/threonine-protein kinase ... [more]
Y3868_ARATH2.637e-1128.35Probable inactive receptor kinase At3g08680 OS=Ara... [more]
RPK1_IPONI2.637e-1122.60Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
BRL2_ARATH2.637e-1133.86Serine/threonine-protein kinase BRI1-like 2 OS=Ara... [more]
ERL2_ARATH3.444e-1126.38LRR receptor-like serine/threonine-protein kinase ... [more]
FEI2_ARATH4.498e-1124.22LRR receptor-like serine/threonine-protein kinase ... [more]
PEPR2_ARATH7.672e-1128.26Leucine-rich repeat receptor-like protein kinase P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006A01EF AbioticL1 Citrus clementina cDNA clone C31006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868880 ID=FC868880; Name=FC868880; organism=Citrus clementina; type=EST; length=670bp
ATTACAAAATTAACCGCTAACAAACCAAGCAATCTTTCAGGGAGAGAAAC
TTTAGTCTCAGTATGATCACTGTGTCATTAACCCACTTCCTGCTTCTTTG
CTTGGTTGTTGTAGCAGCAGCAGCAGCAAGCAACAATATTACCACAGACC
AACAAGCTCTTCTTGCCCTGAAAGATCATATAATTTATGATCCGACCAAC
CTTTTAGCCCATAATTGGACCTCGAATACATCTGTTTGTACCTGGATTGG
CATCACTTGTGATGTCAATAGCCATAGAGTCGCAGCCTTAGATATTTCTC
AATTCAATCTACAAGGCACCATCCCTCCTCAACTTGGAAACCTCTCTTCA
CTCACAACGCTTAATCTTAGTCATAACAAGCTTTCTGGAAACGTTCCCTC
CTCCATCTACACAATGCATACGCTAAAATTTCTTGACTTCACTGATAACC
AGCTCTCTGGTTCGGTGTCTTCCTTCGTCTTCAACATGTCTTCAATAGTA
GAAATTCGTTTGACCAATAACAGATTTTCTGGTGAGCTTCCGAAAAATAT
TTGCAACTATCTTCCTCATTTGAAAGCCCTTTTTTTGGACAAAAACATGT
TTCATAGCAAAATTCCTTCTGCTTTATCAAAGTGCCAACAACCTGCAACA
TTAAATTTGCAGTTCAATAA
back to top