FC868887

Overview
NameFC868887
Unique NameFC868887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV  PLYPGGSFD LGLA+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 203          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV  PLYPGGSFD LGLA+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 203          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV  PLYPGGSFD LGLA+
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 52          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV  PLYPGGSFD LGLA+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 201          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV  PLYPGGSFD LGLA+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 201          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  428 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVNRPLYPGGSFDSL 592
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE    LYPGGSFD L
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPL 56          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16
Identity = 66/200 (33.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:    8 ATSTMFLSSSFVGKAVNLAPSGNELTNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLA 601
            A+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +  +  YPGG+FD LG +
Sbjct:    2 ASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFS 178          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  155 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVE------GYRIAGGPLGEVNRPLYPGGS-FDSLG 595
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V         ++ G  +G      YPGG  FD LG
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG------YPGGLWFDPLG 206          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 59/173 (34.10%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  116 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVE------GYRIAGGPLGEVNRPLYPGGS-FDSLG 595
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V         ++ G  +G      YPGG  FD LG
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG------YPGGLWFDPLG 206          
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 52/138 (37.68%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  188 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLG 595
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +  +  YPGG+FD LG
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLG 177          
The following BLAST results are available for this feature:
BLAST of FC868887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2F_SOLLC2.587e-2090.38Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.587e-2090.38Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.587e-2090.38Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.587e-2090.38Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.587e-2090.38Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA4.880e-1982.14Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU1.017e-1633.00Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC2.960e-1635.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY8.613e-1634.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC3.619e-1437.68Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31006A09EF AbioticL1 Citrus clementina cDNA clone C31006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868887 ID=FC868887; Name=FC868887; organism=Citrus clementina; type=EST; length=606bp
CAAAGAGGCAACCTCAACAATGTTCCTCTCCTCATCATTCGTCGGCAAGG
CTGTGAACCTCGCCCCTTCAGGCAATGAGCTGACCAATGGTGGCCGCATC
TCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGCAGCCCGTGGTA
CGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAA
GCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGG
CTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCAT
CCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGC
TCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCG
GGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAG
CTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCT
TGATGGGAGCTGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAA
GTGAACCGACCATTGTACCCAGGTGGCAGCTTTGATTCATTGGGTTTGGC
TGATGA
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