FC868887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV PLYPGGSFD LGLA+ Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 203
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV PLYPGGSFD LGLA+ Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 203
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV PLYPGGSFD LGLA+ Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 52
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV PLYPGGSFD LGLA+ Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 201
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 449 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLAD 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV PLYPGGSFD LGLA+ Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAE 201
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19 Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 428 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVNRPLYPGGSFDSL 592 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE LYPGGSFD L Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPL 56
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16 Identity = 66/200 (33.00%), Postives = 92/200 (46.00%), Query Frame = 2 Query: 8 ATSTMFLSSSFVGKAVNLAPSGNELTNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLGLA 601 A+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP + ++ I A + + + E R + + YPGG+FD LG + Sbjct: 2 ASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFS 178
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16 Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 2 Query: 155 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVE------GYRIAGGPLGEVNRPLYPGGS-FDSLG 595 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA ++ G V ++ G +G YPGG FD LG Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG------YPGGLWFDPLG 206
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16 Identity = 59/173 (34.10%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 116 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVE------GYRIAGGPLGEVNRPLYPGGS-FDSLG 595 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA ++ G V ++ G +G YPGG FD LG Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG------YPGGLWFDPLG 206
BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14 Identity = 52/138 (37.68%), Postives = 69/138 (50.00%), Query Frame = 2 Query: 188 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVNRPLYPGGSFDSLG 595 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + VE R + + YPGG+FD LG Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLG 177 The following BLAST results are available for this feature:
BLAST of FC868887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868887 ID=FC868887; Name=FC868887; organism=Citrus clementina; type=EST; length=606bpback to top |