FC868887

Overview
NameFC868887
Unique NameFC868887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC868887 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:  185 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 412
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261

HSP 2 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  194 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 397
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440
The following BLAST results are available for this feature:
BLAST of FC868887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
LH18_EUGGR5.226e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC31006A09EF AbioticL1 Citrus clementina cDNA clone C31006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868887 ID=FC868887; Name=FC868887; organism=Citrus clementina; type=EST; length=606bp
CAAAGAGGCAACCTCAACAATGTTCCTCTCCTCATCATTCGTCGGCAAGG
CTGTGAACCTCGCCCCTTCAGGCAATGAGCTGACCAATGGTGGCCGCATC
TCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGCAGCCCGTGGTA
CGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAA
GCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGG
CTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCAT
CCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGC
TCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCG
GGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAG
CTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCT
TGATGGGAGCTGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAA
GTGAACCGACCATTGTACCCAGGTGGCAGCTTTGATTCATTGGGTTTGGC
TGATGA
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