FC868888

Overview
NameFC868888
Unique NameFC868888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14369 contig Ccv1_Contig14369:757..1475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.327e-75
Identity = 129/230 (56.09%), Postives = 160/230 (69.57%), Query Frame = 3
Query:   21 MTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVPGLLFSTSFSIIS 710
            +TW VTCTYSQF+   +PTCCVSLSSFYN TIV CP C+CGC  + T        + P L +     G+   P+ +CT HMCP+RVHWHVK++Y+EYWRVK+TITN+N   NYS WNLVVQHPN  +LTQLFSF Y+ L  Y  LNDT M WGI++YN+ + +   +GNVQ+E++ +KD S FTF  GWAFPRR+YF+G  CVMPPPD YP LP   P    S +  I S
Sbjct:  204 VTWQVTCTYSQFMEAASPTCCVSLSSFYNSTIVPCPRCSCGCPRSPTAPQCISEGEKPELPA---GDGEAVAPVFRCTDHMCPVRVHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQLFSFNYQPLIEYGTLNDTGMFWGIQYYNEMMLQ---DGNVQTEMILKKDKSDFTFSGGWAFPRRVYFDGHECVMPPPDQYPLLPNGGPDSRVSAAQLIAS 427          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.268e-74
Identity = 129/238 (54.20%), Postives = 161/238 (67.65%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINP-KTPHLASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYE-GLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVPGLLFSTSFSIIS 710
            R T  + TW   C YSQF +  +P CCVSLS+FY + IV CPTC+CGC      S  C+   + P      + P +   P+V+C+ HMCPIR+HWHVK+NY+EYWRVKIT TNFN   NY+ WNLVV HPN  ++ Q+FSF YKSLTPY+  +NDT M WG++FYND L + G  GNVQ+ELL +KD   FTF +GWAFPRRI FNGD CVMP PD +P LP        S+S ++IS
Sbjct:  207 RKTQALATWEAVCVYSQFRSSPSPKCCVSLSAFYYQNIVPCPTCSCGCS-----SSHCVKDGELPPYLEQKHDPDEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNWNLVVLHPNLKSVQQVFSFNYKSLTPYQNSINDTGMFWGVQFYNDVLLQEGKIGNVQTELLLKKDMGNFTFREGWAFPRRILFNGDECVMPSPDDFPRLPKSAHS--SSSSSAVIS 437          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.719e-73
Identity = 126/221 (57.01%), Postives = 163/221 (73.76%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPN-RPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKD---ASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYP 653
            R T  +MTWNV CTYSQFLAQK P+CCVSLSSF N+  V CPTC+CGC+N  + +G C+    P L S+++ PG+   +P++QCTSHMCP++++WH+ L  KE++RVKIT+TN NY MN++ WNLVVQ+    ++TQ+  F YKS+   + +NDT MLWG+K Y D L +AG  GNVQ EL+ RKD   +ST    KG AFP R+YFNGDNCVMPPPDAYP
Sbjct:  201 RATQVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQSIIHGPGRWTWQPLLQCTSHMCPVKINWHLMLKDKEHYRVKITVTNLNYRMNFTEWNLVVQYHPILDITQISGFNYKSIQVGK-INDTTMLWGVKPYYDLLMQAGPLGNVQGELIVRKDFRASSTTNNNKGRAFPVRVYFNGDNCVMPPPDAYP 420          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 60/231 (25.97%), Postives = 100/231 (43.29%), Query Frame = 3
Query:   24 TWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINP--------------KTPHLASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQ--HPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSN----------GNVQSELLFRKDAST-FTFEKGWAFPRRIYFNGDNCVMP 635
            +W + C  +Q   +  P CCVS S+F+N++I+ C TCACGC +    + S   P                  L    N       P        C + ++WH+  +Y+  W V+ITI N+   +++  W L VQ   P      + +SF    L+   G+N+T  + G+   +  ++EA             G  QS + F K  +      +   FP ++ FNG+ C++P
Sbjct:  403 SWQIVCNITQAKTE-IPKCCVSFSAFFNDSIIPCNTCACGCVSETRRTCSAETPSLLIPPDALLLPFENRTALTLAWNALKHKTLPNPMPCGDNCGVSINWHMASDYRGGWTVRITIFNWG-EIDFPNWFLAVQMKKPALLGFEKAYSFNASLLSVDGGVNNTIFMEGLPGLDYLVAEADEKDPKKKNIRIPGKQQSVIQFSKKLTPGINVAERDGFPAKVIFNGEECLLP 631          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 65/239 (27.20%), Postives = 108/239 (45.19%), Query Frame = 3
Query:    6 VTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTE-----SGSCINPKTPHLASVVNTPGK----------PNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQ----HPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEA-GSN--------GNVQSELLF-RKDASTFTFEKGWAFPRRIYFNGDNCVMP 635
            VT+ + +W V C  ++  AQ +  CCVS S+FYN + V C TCACGC +  T+     S   + P    L    N   K          P    + C  + C + ++WHV  +YK  W  ++T+ N+     +  W + +      P ++N   ++SF    + P    N T +  G+   N  + +  G+N        G  QS + F +K+       +G  FP +++FNG+ C +P
Sbjct:  410 VTYAISSWQVVCNITKPKAQAS-RCCVSFSAFYNNSAVPCNTCACGCNDIDTDTCNANSNPLLLPPDALLVPFDNRTLKAKAWAKQNHMPVPKKLPCPDN-CGVSINWHVSTDYKNGWTARLTVFNWR-DFAFEDWFVAIDMGKAGPGYEN---VYSFNGTRVPP---SNRTVIFQGLPGMNYLVGQVNGTNPLRDPPVPGKQQSVISFTKKNIKGLNIPEGDGFPTKLFFNGEECALP 639          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 57/230 (24.78%), Postives = 101/230 (43.91%), Query Frame = 3
Query:   24 TWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNN------GTESGSCINPKTPHLASVVN----------TPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEK----------GWAFPRRIYFNGDNCVMP 635
            +W V C  +Q     +P CCVS S+++N++IV C TCACGC +N         + S + P+   L    N             +P    + C  + C + ++WH+  +Y+  W  ++T+ N+    ++  W   VQ  N     +    +  S     G N+T  + G+   N  ++E      +++  +  K  S  +F K          G  FP +++FNG+ C +P
Sbjct:  404 SWQVVCNITQ-PKDASPRCCVSFSAYFNDSIVPCKTCACGCSSNKAARACSATAPSLLLPQQALLVPFENRTELTVAWAYLKQRPVPNPMPCGDN-CGVSINWHLATDYRGGWTARVTVFNWG-ETDFVDWFTAVQMKNAAPGFEKAYSFNASTIGINGKNNTIFMEGLPGLNYLVAERDGENPLKNPRIPGKQQSVMSFTKKLTPGINVPGGDGFPSKVFFNGEECSLP 630          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 62/239 (25.94%), Postives = 108/239 (45.19%), Query Frame = 3
Query:    9 THPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKP--NRPM----------------VQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMN-----YSLWNLVVQHPNFDNLTQLFSFYYKSLTP------YEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLF-RKDASTFTFEKGWAFPRRIYFNGDNCVMP 635
            T+ + +W V C  ++   Q    CCVS S+FYN++ + C TCACGC++  T++    N     L    +T   P  NR +                + C  + C I ++WH+  +Y   W  ++T+  FN+  N     +   +L      ++N   ++SF    + P      ++GL     L GI    +   +    G +QS + F +K+  +     G  FP+R++FNG+ C +P
Sbjct:  401 TYAIASWQVICNITKPKPQAA-RCCVSFSAFYNDSAIPCNTCACGCKDIDTDT---CNANARQLLLPTDTLLVPFDNRTLKAKVWAKQKHMAYPKKLPCPDN-CGISLNWHLNSDYGNGWSARVTL--FNWGNNAVEDWFGALDLGKAGLGYEN---IYSFNGSRVPPKNQTIFFQGLPGMNYLIGITNGTNPARDPQIPGKMQSVISFKKKNLGSLNIIGGDGFPKRVFFNGEECELP 629          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 54/231 (23.38%), Postives = 98/231 (42.42%), Query Frame = 3
Query:   24 TWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPK----TPHLASVVNTPGK----------PNRPM---VQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGW----------AFPRRIYFNGDNCVMP 635
            +W V C  +Q      P CCVS SS++N++++ C TCACG  ++   + +C         P+ A ++    +           NR +   + C  + C + ++WH+  +Y+  W  ++T+ N+    ++  W   V+  N     Q    +  S+    G N T ++ G+   N  L+E       +   +  K  S  +F K             FP ++ FNG  C +P
Sbjct:  397 SWQVVCNITQ---PTPPKCCVSFSSYFNDSVIPCKTCACGGCSSDRVARTCSTTSPALPLPYQALLIPFDNRTKLTNAWAVLKNRKVPDPLPCGDN-CGVSINWHLATDYRGGWTARVTLFNWG-DTDFVDWFTAVELRNAAPGFQKAYSFNGSIIAVNGKNTTVLMEGLPGLNYLLAEKDGKNPSEDFRIPGKQQSVISFTKKLTPGIKVGSKDGFPTKVLFNGQECSLP 622          
The following BLAST results are available for this feature:
BLAST of FC868888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
COBL7_ORYSJ1.327e-7556.09COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]
COBL6_ARATH3.268e-7454.20COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL4_ORYSJ4.719e-7357.01COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL9_ARATH2.153e-1725.97COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH3.673e-1727.20COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
COBL7_ARATH6.264e-1724.78COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
CBL11_ARATH1.706e-1425.94COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]
COBL8_ARATH1.886e-1323.38COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]

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Properties
Property NameValue
Genbank descriptionC31006A10EF AbioticL1 Citrus clementina cDNA clone C31006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868888 ID=FC868888; Name=FC868888; organism=Citrus clementina; type=EST; length=719bp
GGAGAGTCACACATCCTATGATGACCTGGAATGTCACATGCACATATTCA
CAGTTCTTGGCTCAAAAGACACCCACCTGTTGTGTTTCTCTCTCTTCCTT
CTACAATGAAACAATAGTAAGCTGCCCAACGTGTGCTTGTGGCTGTCAAA
ACAATGGAACGGAATCTGGGAGTTGCATAAATCCAAAGACTCCACATTTG
GCATCAGTTGTGAATACTCCAGGAAAACCCAACAGACCAATGGTCCAGTG
TACCAGCCATATGTGTCCCATCCGAGTTCATTGGCATGTCAAGCTCAATT
ATAAGGAGTACTGGCGTGTGAAGATCACAATCACTAATTTTAATTACGCA
ATGAATTACTCACTGTGGAATCTAGTCGTGCAACACCCCAACTTTGATAA
TCTCACACAGCTTTTCAGCTTTTATTACAAGTCATTAACTCCTTATGAAG
GCTTAAATGATACAGCCATGCTGTGGGGAATAAAGTTTTACAATGATTTT
CTCTCTGAAGCAGGCTCTAATGGGAACGTGCAGTCAGAGCTGCTGTTTCG
AAAAGACGCATCAACATTTACTTTTGAGAAGGGTTGGGCTTTCCCTAGAA
GGATTTATTTTAATGGAGATAACTGTGTGATGCCACCTCCAGATGCCTAC
CCGTGGTTGCCAACGCAAGTTCCCGGCCTGTTATTCTCTACTTCGTTCAG
CATAATATCTTGGCATCTT
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