FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STAES (MutS2 protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = 2
Query:  113 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            ++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++  F++V+ DIGDEQS+ QSLSTFS H+K I  I            DE+GAGT+P EG AL MS+L+     GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPG 488          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LACBA (MutS2 protein OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 85/188 (45.21%), Postives = 116/188 (61.70%), Query Frame = 2
Query:   44 QVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            QV+  +  HP       V  DI I R  + +++TGPNTGGKTI LKT+ L  +M +SGL I ++E + +  FD +FADIGDEQS+ QSLSTFSGH++ I  I            DE+GAGT+P EG AL +++L+     GS + +A+TH+ ELK   Y+     NA MEFD   L+P Y +L G+PG
Sbjct:  300 QVNLRQARHPLIDPKKVVANDITIGRDYKTIIVTGPNTGGKTITLKTLALVQLMGQSGLFIPANENSVIGIFDDIFADIGDEQSIEQSLSTFSGHMENIVAILRQADERSLIVVDELGAGTDPQEGAALAIAILDQMGTLGSYV-MASTHYPELKAYGYNRPETINASMEFDGETLQPTYHLLIGIPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_GEOKA (MutS2 protein OS=Geobacillus kaustophilus GN=mutS2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 83/177 (46.89%), Postives = 113/177 (63.84%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+    VP DI +      +VITGPNTGGKT+ LKT+GL  +MA++GL I +++ ++   F SVFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+     G+  T+ATTH+ ELK   Y+     NA +EFD   L+P YK+L G+PG
Sbjct:  312 LDQEKAVPNDIELGGDYTTIVITGPNTGGKTVTLKTIGLLTLMAQAGLFIPAADGSEAAVFRSVFADIGDEQSIEQSLSTFSSHMVNIVDILRHVDGESLVLFDELGAGTDPQEGAALAIAILDEVHGRGA-RTVATTHYPELKAYGYNRPGVVNASVEFDTETLRPTYKLLIGIPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_GEMAT (MutS2 protein OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 78/171 (45.61%), Postives = 110/171 (64.33%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP D+ +    R ++++GPNTGGKT+ LK +GL  MMA+ G+     E +++  FD ++AD+GDEQS+  SLSTFS HLK +G I            DE+G+GT+P EG ALG ++LE     G+ LT+ATTH G+LK L    +   NA ++FD V+L P Y++L GVPG
Sbjct:  322 VPFDLTLHAGERTMLVSGPNTGGKTVLLKAIGLISMMAQCGVPAPLGETSQLAVFDDLYADVGDEQSIEASLSTFSAHLKNLGEILRSATTSSLVLIDELGSGTDPAEGAALGGAILETLTRRGT-LTLATTHLGQLKLLATDVEGVVNASLQFDAVQLAPTYRLLKGVPG 491          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLONN (MutS2 protein OS=Clostridium novyi (strain NT) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 84/168 (50.00%), Postives = 109/168 (64.88%), Query Frame = 2
Query:   83 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            +I++      +VITGPNTGGKT+ LKTVGL  +MA SGL I +S+ + + +F  VFADIGDEQS+ QSLSTFS H+  I NI            DE+GAGT+P EG AL +S+LE   +  + + IATTH+ ELK      D  ENA +EFD   L+P Y++L GVPG
Sbjct:  318 NIYLRDGITSVVITGPNTGGKTVTLKTVGLLHIMAMSGLMITASQGSTISFFKEVFADIGDEQSIEQSLSTFSSHMTNIVNIIDSADENSLVLFDELGAGTDPTEGAALAVSILENLRKRKTKV-IATTHYSELKAYALKVDNVENASVEFDVETLRPTYRLLIGVPG 484          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_EXIS2 (MutS2 protein OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 77/171 (45.03%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPI + +  +   LVITGPNTGGKT+ LKT+GL  +M +SGL++ +++  ++  FD+++ADIGDEQS+ Q+LSTFS H+  I ++            DE+GAGT+P EG AL +++L+     G+ +  ATTH+ ELK   Y+ +   NA MEFD   L P Y++L GVPG
Sbjct:  318 VPITVSLGGEFTSLVITGPNTGGKTVTLKTIGLLQLMVQSGLYVPAADETELSVFDAIYADIGDEQSIEQNLSTFSSHMTNIVSMMGKIDFMSLVLFDELGAGTDPTEGAALAIAILDEVKRRGARVA-ATTHYSELKAYGYNREGVVNASMEFDVESLSPTYRLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_OCEIH (MutS2 protein OS=Oceanobacillus iheyensis GN=mutS2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.030e-36
Identity = 85/180 (47.22%), Postives = 114/180 (63.33%), Query Frame = 2
Query:   68 HP-VPIDIFIA------RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            HP +PID  +A      R+   +VITGPNTGGKT+ LK VGL  +MA+SGL + + +  ++P FD VFADIGDEQS+ Q+LSTFS H+  I +I            DE+G+GT+P EG AL M++L+    S     IATTH+ ELK   Y+ +   NA +EF+   LKP Y++L GVPG
Sbjct:  305 HPMIPIDEVVANDIEFGREYTSIVITGPNTGGKTVTLKLVGLCTLMAQSGLQVPALDGCEMPVFDEVFADIGDEQSIEQNLSTFSSHMTNIVDIMKKITDRSLVLFDELGSGTDPQEGAALAMAILDEVI-SKQARVIATTHYPELKAYGYNREQVVNASVEFNVETLKPTYRLLIGVPG 483          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LEUMM (MutS2 protein OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.030e-36
Identity = 85/190 (44.74%), Postives = 116/190 (61.05%), Query Frame = 2
Query:   38 EMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            E  +S  +  HP       V  DI +    + ++ITGPNTGGKTI +KT+GL  +MA+SGL I + + + +  FD VFADIGDEQS+ Q+LSTFS H+  I ++            DE+GAGT+P EG AL +++L+  A  G+  TIATTH+ ELK   Y+    +NA M FD   L+P Y+ L GVPG
Sbjct:  300 ENHISLRQAWHPLLDKKIAVANDISLGDSYKTIIITGPNTGGKTITIKTLGLLQLMAQSGLFITTRQPSTIGIFDEVFADIGDEQSIEQNLSTFSSHMANIVSMLDHIDDKTLVIFDELGAGTDPAEGAALAIAILDKVASLGA-YTIATTHYPELKLYGYNRPETKNASMVFDVETLQPTYQFLMGVPG 488          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_PEDPA (MutS2 protein OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.651e-36
Identity = 90/200 (45.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:   26 LSPSEMQVSAL------ELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L  +E Q+SA       E  HP       V  DI +  +   LVITGPNTGGKTI LKTVGL  +MA+SG+ I ++E + V  F+ +FADIGDEQS+ Q+LSTFS H+     I            DE+GAGT+P EG AL +++L+    +G+ +++ TTH+ ELKT  Y      NA MEFD   L+P YK+L G+PG
Sbjct:  288 LKATEPQISASNEINLREARHPLIDQKKVVSNDIRLGGEYETLVITGPNTGGKTITLKTVGLLQLMAQSGMFIPANENSTVRIFEEIFADIGDEQSIEQNLSTFSSHMDNTIRILGNLNERSLALFDELGAGTDPKEGAALAIAILDKVRSTGA-VSMTTTHYPELKTYGYERMGTINASMEFDVDTLQPTYKLLLGIPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_FUSNN (MutS2 protein OS=Fusobacterium nucleatum subsp. nucleatum GN=mutS2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.462e-36
Identity = 81/192 (42.19%), Postives = 117/192 (60.94%), Query Frame = 2
Query:   35 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            S  ++ +LE A HP        P+   I +   +L+ITGPNTGGKT+ LKT GL  +MA SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK +  I            DE+G+GT+P+EG A  M++++   E     +  TTH+ ++K   Y+ +  E A MEF+   L P Y++L G+PG
Sbjct:  294 SNKEILSLEKARHPFIDKDKVTPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMALSGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDELGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTLSPTYRLLVGIPG 484          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_STAES9.111e-3750.63MutS2 protein OS=Staphylococcus epidermidis (strai... [more]
MUTS2_LACBA9.111e-3745.21MutS2 protein OS=Lactobacillus brevis (strain ATCC... [more]
MUTS2_GEOKA9.111e-3746.89MutS2 protein OS=Geobacillus kaustophilus GN=mutS2... [more]
MUTS2_GEMAT9.111e-3745.61MutS2 protein OS=Gemmatimonas aurantiaca (strain T... [more]
MUTS2_CLONN9.111e-3750.00MutS2 protein OS=Clostridium novyi (strain NT) GN=... [more]
MUTS2_EXIS21.190e-3645.03MutS2 protein OS=Exiguobacterium sibiricum (strain... [more]
MUTS2_OCEIH2.030e-3647.22MutS2 protein OS=Oceanobacillus iheyensis GN=mutS2... [more]
MUTS2_LEUMM2.030e-3644.74MutS2 protein OS=Leuconostoc mesenteroides subsp. ... [more]
MUTS2_PEDPA2.651e-3645.00MutS2 protein OS=Pediococcus pentosaceus (strain A... [more]
MUTS2_FUSNN3.462e-3642.19MutS2 protein OS=Fusobacterium nucleatum subsp. nu... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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