FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_THEP1 (MutS2 protein OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 71/171 (41.52%), Postives = 102/171 (59.65%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPI++ +    R  +ITGPN GGKT+ +KTVGL   +  SG  +   E  ++  F  + ADIG+EQS+ QSLSTFS H+K+I  I            DE+G+GT+P+EG AL ++++E   E G+ + + TTH   +K    ++    NA MEFD   L P Y++L GVPG
Sbjct:  304 VPINLELPPNKRGFIITGPNMGGKTVTVKTVGLFTALMMSGFPLPCDEGTELKVFPKIMADIGEEQSIEQSLSTFSSHMKKIVEIVKNADSDSLVILDELGSGTDPVEGAALAVAIIEDLLEKGATIFV-TTHLTPVKVFAMNHPLLLNASMEFDPETLSPTYRVLVGVPG 473          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_THEMA (MutS2 protein OS=Thermotoga maritima GN=mutSB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 71/171 (41.52%), Postives = 102/171 (59.65%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPI++ +    R  +ITGPN GGKT+ +KTVGL   +  SG  +   E  ++  F  + ADIG+EQS+ QSLSTFS H+K+I  I            DE+G+GT+P+EG AL ++++E   E G+ + + TTH   +K    ++    NA MEFD   L P Y++L GVPG
Sbjct:  304 VPINLELPPNKRGFIITGPNMGGKTVTVKTVGLFTALMMSGFPLPCDEGTELKVFPKIMADIGEEQSIEQSLSTFSSHMKKIVEIVKNADSDSLVILDELGSGTDPVEGAALAIAIIEDLLEKGATIFV-TTHLTPVKVFAMNHPLLLNASMEFDPETLSPTYRVLVGVPG 473          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_SULSY (MutS2 protein OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 72/189 (38.10%), Postives = 113/189 (59.79%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG----YRIITSIYLMSEVL 628
            +PIDI +  K R LVITGPNTGGKT+ LKT GL  ++ +S + I   E +K+P F+ +F DIGD QS+ ++LST+S H+K I  +            DE+  GT+P   +A+G+++L+ + +  ++  IATTH  ++K    +ND+F+ A + FD+  L P YKI +   G    + I   + L  E++
Sbjct:  314 IPIDILLDEK-RGLVITGPNTGGKTVALKTAGLLSLIFQSAIAIPVDEGSKIPIFNGIFIDIGDYQSIEENLSTYSAHIKNIREMLDLANKNSLLLFDELIPGTDPDFASAIGIAILD-YVKEKNIRVIATTHLKKIKAYVLNNDYFKIAAVGFDKETLTPTYKIYYNAVGESMAFYIAQKLNLQKEII 500          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_DESMR (MutS2 protein OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 69/187 (36.90%), Postives = 100/187 (53.48%), Query Frame = 2
Query:   56 LELAHP---VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPGYRIITSI 607
            L LA P   V  D+ +A   R L++TG N GGKT+CLKT+GL   MA SGL + + E + +P+F  +F  +GDEQSL   LSTF+  ++ +  +            DE GAGT+P +G AL  ++++   + G+ L  A TH   LK    S +    ACM FD    KP Y++ +   G  I   +
Sbjct:  308 LALAGPDSAVAQDLELAPDQRALIVTGANAGGKTVCLKTLGLLAAMALSGLPVPAGEGSSLPFFAKIFVFLGDEQSLEDHLSTFTAQIRHLSRVWPDIDADTLVLLDEFGAGTDPSQGAALAQAVVDGLLDRGAYLA-AATHFPALKAYGLSREGVRAACMLFDPATKKPLYRLAYDQVGASIALDV 493          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BORBU (MutS2 protein OS=Borrelia burgdorferi GN=mutSB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 66/166 (39.76%), Postives = 96/166 (57.83%), Query Frame = 2
Query:   89 FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            F   + RV++ITGPN GGKT+ LKT+GL   M + G+ I+  E +    FD++F DIGDEQS+S SLSTFS H+  I  I            DE  +GT+  +G AL +S+LE      S + I +TH+  LK   Y+++   NA M  D   ++P Y +++ +PG
Sbjct:  322 FTPAENRVVIITGPNAGGKTVTLKTIGLLSAMFQFGIPIVVGESSTFKIFDNIFIDIGDEQSISNSLSTFSSHMSNISYILKHTTKDSLVIFDEFCSGTDIDQGQALAISILEYLININSYVLI-STHYNALKYFAYTHEGVVNASMRMDLETMQPNYNLIFSIPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_ANADF (MutS2 protein OS=Anaeromyxobacter sp. (strain Fw109-5) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 64/186 (34.41%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   56 LELAHP---------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L L HP         VP  + +    R L+++GPN GGKT+ +  VGL+ +M ++GL + ++E +++P+F  V A + +   L++ LSTF+ HL  +  +            DEI A T+P EG AL  ++LE+  E G+ + + TTH  ELK L  ++  + NA + FD  +L P Y++  G PG
Sbjct:  312 LSLRHPLLVLQGKKVVPSHVRLDAPARALIVSGPNGGGKTVAITAVGLSALMLRAGLPVAAAEGSRLPFFLEVKAAVDERGDLAKDLSTFTAHLAAVKEMLAGAVPGSLILVDEIAADTDPREGAALAAAILESLVERGAAV-LVTTHLDELKALALTDPRYANARVGFDAERLAPTYQLHLGSPG 496          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_DESAD (MutS2 protein OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   77 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPGYRIITSI 607
            P++I +    +VL+++G N GGKT+CLKTVGL   MA SG+ +   + + +P F  +F  +GDEQSL +++STFS  ++ I  I            DE G+GT+P +G AL  ++++   E+G +   A TH   LKT     +    A + FD    KP + + +   G  I   +
Sbjct:  319 PLNIELPTDQKVLIVSGGNAGGKTVCLKTVGLLSAMAFSGIPVPVEKGSVLPLFKEIFVIMGDEQSLEENVSTFSAQIQSISRIWDSMDSSTLFILDEFGSGTDPAQGAALAQAVVDGLLENG-VTCFAATHFPALKTYALVTEGVRAASVLFDPSTKKPLFSLAYDQVGASIALDV 494          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_BUCAT (DNA mismatch repair protein mutS OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=mutS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 2
Query:   47 VSALELAHPV----------PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 520
            +S LE  HPV             +F++R  R+++ITGPN GGK+  ++ + L V+MA  G  +  + YA +   D +F  IG    LS   STF   + +I NI            DE+G GT+  EG +L  S           +T+ +TH  EL  L+    F +N
Sbjct:  581 ISLLESRHPVVECFLKTPFIKNSVFLSRTQRMIIITGPNMGGKSTYMRQIALIVIMAGIGSFV-PARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNILHNATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEKFVKN 747          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_BUCAI (DNA mismatch repair protein mutS OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mutS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 2
Query:   47 VSALELAHPV----------PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 520
            +S LE  HPV             +F++R  R+++ITGPN GGK+  ++ + L V+MA  G  +  + YA +   D +F  IG    LS   STF   + +I NI            DE+G GT+  EG +L  S           +T+ +TH  EL  L+    F +N
Sbjct:  581 ISLLESRHPVVECFLKTPFIKNSVFLSRTQRMIIITGPNMGGKSTYMRQIALIVIMAGIGSFV-PARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNILHNATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEKFVKN 747          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_BUCA5 (DNA mismatch repair protein mutS OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=mutS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 2
Query:   47 VSALELAHPV----------PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 520
            +S LE  HPV             +F++R  R+++ITGPN GGK+  ++ + L V+MA  G  +  + YA +   D +F  IG    LS   STF   + +I NI            DE+G GT+  EG +L  S           +T+ +TH  EL  L+    F +N
Sbjct:  581 ISLLESRHPVVECFLKTPFIKNSVFLSRTQRMIIITGPNMGGKSTYMRQIALIVIMAGIGSFV-PARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNILHNATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEKFVKN 747          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_THEP11.966e-3141.52MutS2 protein OS=Thermotoga petrophila (strain RKU... [more]
MUTS2_THEMA1.966e-3141.52MutS2 protein OS=Thermotoga maritima GN=mutSB PE=3... [more]
MUTS2_SULSY1.079e-2938.10MutS2 protein OS=Sulfurihydrogenibium sp. (strain ... [more]
MUTS2_DESMR5.919e-2836.90MutS2 protein OS=Desulfovibrio magneticus (strain ... [more]
MUTS2_BORBU2.249e-2739.76MutS2 protein OS=Borrelia burgdorferi GN=mutSB PE=... [more]
MUTS2_ANADF1.612e-2534.41MutS2 protein OS=Anaeromyxobacter sp. (strain Fw10... [more]
MUTS2_DESAD8.845e-2433.90MutS2 protein OS=Desulfovibrio salexigens (strain ... [more]
MUTS_BUCAT1.786e-1631.55DNA mismatch repair protein mutS OS=Buchnera aphid... [more]
MUTS_BUCAI1.786e-1631.55DNA mismatch repair protein mutS OS=Buchnera aphid... [more]
MUTS_BUCA51.786e-1631.55DNA mismatch repair protein mutS OS=Buchnera aphid... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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