FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_BACWK (DNA mismatch repair protein mutS OS=Bacillus weihenstephanensis (strain KBAB4) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 520
            VP D  +  K  V +ITGPN  GK+  ++ + L  +M++ G  + ++E A +P FD +F  IG    L    STF   + +  N             DEIG GT+  +G AL  +++E   +     T+ +TH+ EL  L+ S D  +N
Sbjct:  590 VPNDCIMPEKMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATE-AVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKN 737          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_BACCR (DNA mismatch repair protein mutS OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 520
            VP D  +  K  V +ITGPN  GK+  ++ + L  +M++ G  + ++E A +P FD +F  IG    L    STF   + +  N             DEIG GT+  +G AL  +++E   +     T+ +TH+ EL  L+ S D  +N
Sbjct:  584 VPNDCIMPEKMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATE-AVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKN 731          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_BACC2 (DNA mismatch repair protein mutS OS=Bacillus cereus (strain G9842) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 520
            VP D  +  K  V +ITGPN  GK+  ++ + L  +M++ G  + ++E A +P FD +F  IG    L    STF   + +  N             DEIG GT+  +G AL  +++E   +     T+ +TH+ EL  L+ S D  +N
Sbjct:  590 VPNDCIMPEKMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATE-AVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKN 737          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MSH3_PICST (DNA mismatch repair protein MSH3 OS=Pichia stipitis GN=MSH3 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKTLKYS 502
            VP DI I    +VL+ITGPN GGK+  +K V L V+M++ G +I   + A +  FDS+F  +G   ++ +  STF   + +  NI            DEIG GT   +G AL  S+L    ES    L +  TH+  L  L+ S
Sbjct:  775 VPNDIDICYDNKVLIITGPNMGGKSSYVKQVALLVIMSQIGCYI-PCDRATLGVFDSIFIRMGASDNILKGNSTFMNEMLECSNIIHGISNKSLVILDEIGRGTGTSDGIALAYSILRYLIESPLRPLVLFITHYPSLHVLEDS 917          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_TERTT (DNA mismatch repair protein mutS OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 43/140 (30.71%), Postives = 72/140 (51.43%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 493
            +P D+ +  + R+L+ITGPN GGK+  ++   L V++A+ G ++  +E  ++   D +F  IG    L+   STF   + +  NI            DEIG GT+  +G +L  + +E  AE     T+  TH+ E+  L
Sbjct:  604 IPNDLTLNAQQRMLIITGPNMGGKSTYMRQTALIVLLAQVGSYV-PAEACRLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATSDSLVLMDEIGRGTSTYDGLSLAWACVEHLAEKLKSFTLFATHYFEITAL 742          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_STAAW (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain MW2) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 547
            VP +  +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG    L    STF   + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  585 VPNNCRLDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_STAAU (DNA mismatch repair protein mutS OS=Staphylococcus aureus GN=mutS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 547
            VP +  +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG    L    STF   + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  585 VPNNCRLDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_STAAT (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 547
            VP +  +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG    L    STF   + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  585 VPNNCRLDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_STAAS (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain MSSA476) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 547
            VP +  +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG    L    STF   + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  585 VPNNCRLDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS_STAAR (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain MRSA252) GN=mutS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 547
            VP +  +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG    L    STF   + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  585 VPNNCRLDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS_BACWK3.725e-1431.54DNA mismatch repair protein mutS OS=Bacillus weihe... [more]
MUTS_BACCR3.725e-1431.54DNA mismatch repair protein mutS OS=Bacillus cereu... [more]
MUTS_BACC23.725e-1431.54DNA mismatch repair protein mutS OS=Bacillus cereu... [more]
MSH3_PICST3.725e-1436.11DNA mismatch repair protein MSH3 OS=Pichia stipiti... [more]
MUTS_TERTT4.865e-1430.71DNA mismatch repair protein mutS OS=Teredinibacter... [more]
MUTS_STAAW4.865e-1430.38DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAAU4.865e-1430.38DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAAT4.865e-1430.38DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAAS4.865e-1430.38DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAAR4.865e-1430.38DNA mismatch repair protein mutS OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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