FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRE4 (MutS2 protein OS=Streptococcus equi subsp. equi (strain 4047) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 86/175 (49.14%), Postives = 115/175 (65.71%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            + +PV  D+  A    V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V  F+ ++ADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG +L M++LE    + ++ T+ATTH+ ELK       + ENA M FD V LKP Y+ + GVPG
Sbjct:  307 IQNPVANDLHFANDLAVIVITGPNTGGKTIMLKTLGLAQVMAQSGLPILADKGSRVAVFNGIYADIGDEQSIEQSLSTFSSHMTHIVEILNQADSDSLILFDELGAGTDPQEGASLAMAILEQLRLT-NIKTMATTHYPELKAYGIETAYVENASMAFDNVSLKPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BREBN (MutS2 protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 87/193 (45.08%), Postives = 120/193 (62.18%), Query Frame = 2
Query:    8 RRKRSSLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            R+ R  L P E+ V         P+D+ +  + + +V+TGPNTGGKT+ LKT+GL  +M  +GLHI + E +++  F S+FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL MS+++   +SG+ L +ATTH+ ELK   Y      NA +EFD   L+P Y++L GVPG
Sbjct:  304 RKARHPLIPREVVV---------PVDVELGGEYQAIVVTGPNTGGKTVSLKTIGLLSLMTMAGLHIPAEEESEMTVFSSIFADIGDEQSIEQSLSTFSSHMTNIIQILAKMDDKSLVLFDELGAGTDPTEGAALAMSIIDHVIDSGARL-VATTHYSELKAYAYDRPEVINASVEFDVQTLRPTYRLLIGVPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRA5 (MutS2 protein OS=Streptococcus agalactiae serotype V GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 85/175 (48.57%), Postives = 116/175 (66.29%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L++PV  D+   +    +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+  F+++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG +L M++LE    S ++ T+ATTH+ ELK      +F ENA MEFD   L P Y+ + GVPG
Sbjct:  307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFNNIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAILEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRA3 (MutS2 protein OS=Streptococcus agalactiae serotype III GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 85/175 (48.57%), Postives = 116/175 (66.29%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L++PV  D+   +    +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+  F+++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG +L M++LE    S ++ T+ATTH+ ELK      +F ENA MEFD   L P Y+ + GVPG
Sbjct:  307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFNNIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAILEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRA1 (MutS2 protein OS=Streptococcus agalactiae serotype Ia GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 85/175 (48.57%), Postives = 116/175 (66.29%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L++PV  D+   +    +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+  F+++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG +L M++LE    S ++ T+ATTH+ ELK      +F ENA MEFD   L P Y+ + GVPG
Sbjct:  307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFNNIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAILEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOAB (MutS2 protein OS=Clostridium acetobutylicum GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 85/177 (48.02%), Postives = 116/177 (65.54%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            ++ A  VP++I++ R+   LVITGPNTGGKT+ LKT GL  +MA SGL I + E + + +F  V+ADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL +S+LEA  + G+ + +ATTH+ ELK      +  ENA +EFD   L+P Y++L G+PG
Sbjct:  309 IDPAKVVPLNIYMGREFTSLVITGPNTGGKTVTLKTTGLLEVMAMSGLMIPARENSTISFFKEVYADIGDEQSIEQSLSTFSSHMTNIVRIIDDADEDSLVLFDELGAGTDPTEGAALAISILEALRKRGTKI-VATTHYSELKAYALKTENVENASVEFDVETLRPTYRLLIGIPG 484          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRSY (MutS2 protein OS=Streptococcus suis (strain 05ZYH33) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 89/199 (44.72%), Postives = 119/199 (59.80%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG----YRIITSIYLMSEVLMSLLIW 646
            +A PVP D++   +   +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+     I            DE+GAGT+P EG +L M++L+     G + T+ATTH+ ELK         ENA MEFD   L+P YK + GVPG    + I   + L   ++ S   W
Sbjct:  308 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVEILRAADQDSLILFDELGAGTDPQEGASLAMAILDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAFEIARRLGLSDIIIQSAQSW 505          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRS2 (MutS2 protein OS=Streptococcus suis (strain 98HAH33) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 89/199 (44.72%), Postives = 119/199 (59.80%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG----YRIITSIYLMSEVLMSLLIW 646
            +A PVP D++   +   +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+     I            DE+GAGT+P EG +L M++L+     G + T+ATTH+ ELK         ENA MEFD   L+P YK + GVPG    + I   + L   ++ S   W
Sbjct:  308 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVEILRAADQDSLILFDELGAGTDPQEGASLAMAILDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAFEIARRLGLSDIIIQSAQSW 505          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOBB (MutS2 protein OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 92/189 (48.68%), Postives = 119/189 (62.96%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG----YRIITSIYLMSEVL 628
            VP+D+ +  +   L+ITGPNTGGKT+ LKTVGL  +MA SGL I +S  + V +F  VFADIGDEQS+ QSLSTFS HL  I NI            DE+G GT+P EG AL ++++E  +  G+ L IATTH+ ELK    + D  ENA +EFD   L+P Y++L GVPG    + I   I L  EV+
Sbjct:  315 VPLDVVLGDEFDTLMITGPNTGGKTVTLKTVGLLHIMALSGLLIPASSNSSVSFFKEVFADIGDEQSIEQSLSTFSSHLTNIVNIMEYDNRQSLILFDELGGGTDPAEGAALAIAIIENLSSKGAKL-IATTHYSELKAYALNKDRVENASVEFDINTLRPTYRLLIGVPGKSNAFEISKRIGLGKEVI 502          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOB8 (MutS2 protein OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP DI++  + + L+ITGPNTGGKT+ +KTVGL  +M  SGL I + + + + +F  +FADIGDEQS+ QSLSTFS H+  I NI            DE+GAGT+P EG AL +S+LE     G+ L IATTH+ ELK      D  ENA +EFD   L+P Y++L GVPG
Sbjct:  315 VPSDIYLGEEFQTLMITGPNTGGKTVTIKTVGLLHIMGLSGLLIPARDNSSIAFFKEIFADIGDEQSIEQSLSTFSSHMTNIVNIMKHVDDKSLALFDELGAGTDPAEGAALAVSILETLRNRGAKL-IATTHYSELKAYALKTDGVENASVEFDIETLRPTYRLLIGVPG 484          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_STRE41.150e-3949.14MutS2 protein OS=Streptococcus equi subsp. equi (s... [more]
MUTS2_BREBN1.150e-3945.08MutS2 protein OS=Brevibacillus brevis (strain 47 /... [more]
MUTS2_STRA51.502e-3948.57MutS2 protein OS=Streptococcus agalactiae serotype... [more]
MUTS2_STRA31.502e-3948.57MutS2 protein OS=Streptococcus agalactiae serotype... [more]
MUTS2_STRA11.502e-3948.57MutS2 protein OS=Streptococcus agalactiae serotype... [more]
MUTS2_CLOAB1.502e-3948.02MutS2 protein OS=Clostridium acetobutylicum GN=mut... [more]
MUTS2_STRSY1.961e-3944.72MutS2 protein OS=Streptococcus suis (strain 05ZYH3... [more]
MUTS2_STRS21.961e-3944.72MutS2 protein OS=Streptococcus suis (strain 98HAH3... [more]
MUTS2_CLOBB1.961e-3948.68MutS2 protein OS=Clostridium botulinum (strain Ekl... [more]
MUTS2_CLOB81.961e-3949.71MutS2 protein OS=Clostridium beijerinckii (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
back to top