FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOBA (MutS2 protein OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 91/189 (48.15%), Postives = 119/189 (62.96%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG----YRIITSIYLMSEVL 628
            VP+D+ +  +   L+ITGPNTGGKT+ LKTVGL  +MA SGL I +S  + V +F  VFADIGDEQS+ QSLSTFS HL  I NI            DE+G GT+P EG AL ++++E  +  G+ L IATTH+ ELK    + +  ENA +EFD   L+P Y++L GVPG    + I   I L  EV+
Sbjct:  315 VPLDVVLGDEFDTLMITGPNTGGKTVTLKTVGLLHIMALSGLLIPASSNSSVSFFKEVFADIGDEQSIEQSLSTFSSHLTNIVNIMEYDNRQSLILFDELGGGTDPAEGAALAIAIIENLSSKGAKL-IATTHYSELKAYALNKERVENASVEFDINTLRPTYRLLIGVPGKSNAFEISKRIGLGKEVI 502          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACHD (MutS2 protein OS=Bacillus halodurans GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 84/171 (49.12%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPIDI +      LVITGPNTGGKT+ LKT+GL  +MA+SGLH+ + E +++  F  VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P Y++L GVPG
Sbjct:  318 VPIDIELGHSYSSLVITGPNTGGKTVTLKTIGLLTLMAQSGLHVPAEEESELAVFKHVFADIGDEQSIEQSLSTFSSHMTNIVDILGKVDHESLVLFDELGAGTDPTEGAALAIAILDDVYRRGARI-VATTHYSELKGYAYNREGVMNASVEFDVETLSPTYRLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LACS1 (MutS2 protein OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 85/177 (48.02%), Postives = 114/177 (64.41%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L++   V  DI I +  + +VITGPNTGGKTI LKT+GL  +M +SGL+I + E +++  FD +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL +S+L+A    GS + +ATTH+ ELK   +      NA MEFD   L+P Y++L G+PG
Sbjct:  311 LDMKKAVKNDIMIGKDYQAIVITGPNTGGKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFDDIFADIGDEQSIEQSLSTFSSHMTNIVEILKGIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGFERPNTINASMEFDANTLQPTYRLLIGIPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACCN (MutS2 protein OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 85/171 (49.71%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP DI + +    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   E +++  F ++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  318 VPNDIVLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVQEESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVHNRGARV-VATTHYPELKAYGYNRNQVINASVEFDVNTLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRTD (MutS2 protein OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 86/175 (49.14%), Postives = 111/175 (63.43%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L +PV  D+       V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG +L M++LE    S  + T+ATTH+ ELK         ENA MEFD   L+P Y+ + GVPG
Sbjct:  307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQEIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAILEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRT2 (MutS2 protein OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 86/175 (49.14%), Postives = 111/175 (63.43%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L +PV  D+       V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG +L M++LE    S  + T+ATTH+ ELK         ENA MEFD   L+P Y+ + GVPG
Sbjct:  307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQEIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAILEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRT1 (MutS2 protein OS=Streptococcus thermophilus (strain CNRZ 1066) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 86/175 (49.14%), Postives = 111/175 (63.43%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L +PV  D+       V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG +L M++LE    S  + T+ATTH+ ELK         ENA MEFD   L+P Y+ + GVPG
Sbjct:  307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQEIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAILEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRP4 (MutS2 protein OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 2
Query:   44 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            ++  L + HP     V  D+   +    +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F+ +FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL M++LE       + T+ATTH+ ELK       F +NA MEFD   L+P Y+ + GVPG
Sbjct:  296 EIQLLHVCHPLVKNAVANDVHFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTDPQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_FINM2 (MutS2 protein OS=Finegoldia magna (strain ATCC 29328) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 83/171 (48.54%), Postives = 110/171 (64.33%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPI I++      LVITGPNTGGKT+ LKTVGL  +MA+SG+ I   E ++V  FD++F DIGDEQS+ QSLSTFS H+K I +I            DE+GAGT+P EG AL +++L  F    S+ TIATTH+ +LK    +  + +N  +EFD   L P YK+  G+PG
Sbjct:  316 VPISIYLGDDYNTLVITGPNTGGKTVTLKTVGLITLMAQSGILIPVDENSEVAIFDNIFTDIGDEQSIEQSLSTFSAHMKNIVHIVNNITFNSLVLFDELGAGTDPTEGAALAIAILRIFLYK-SIRTIATTHYSQLKIFALTEKYVKNGSVEFDVNTLSPTYKLRIGIPG 485          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_EUBE2 (MutS2 protein OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 81/171 (47.37%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPIDI++    ++L+ITGPNTGGKT+ LKTVGL  +MA+SGL I + +++ +  F +++ADIGDEQS+ QSLSTFS H+     I            DEIGAGT+P EG AL +++L      G + T+ATTH+ E+K    S +  ENA  EFD   L+P Y++L G+PG
Sbjct:  312 VPIDIYLGTDFKLLIITGPNTGGKTVSLKTVGLLTLMAQSGLFIPALDHSDIAVFKNIYADIGDEQSIEQSLSTFSSHMTNTVKILKEADENCLVLFDEIGAGTDPTEGAALAIAILNDLKMRG-VTTMATTHYSEIKLYALSTEGVENASCEFDVESLRPTYRLLIGIPG 481          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_CLOBA5.707e-3948.15MutS2 protein OS=Clostridium botulinum (strain Ala... [more]
MUTS2_BACHD5.707e-3949.12MutS2 protein OS=Bacillus halodurans GN=mutS2 PE=3... [more]
MUTS2_LACS17.453e-3948.02MutS2 protein OS=Lactobacillus salivarius subsp. s... [more]
MUTS2_BACCN7.453e-3949.71MutS2 protein OS=Bacillus cereus subsp. cytotoxis ... [more]
MUTS2_STRTD9.734e-3949.14MutS2 protein OS=Streptococcus thermophilus (strai... [more]
MUTS2_STRT29.734e-3949.14MutS2 protein OS=Streptococcus thermophilus (strai... [more]
MUTS2_STRT19.734e-3949.14MutS2 protein OS=Streptococcus thermophilus (strai... [more]
MUTS2_STRP41.660e-3846.24MutS2 protein OS=Streptococcus pneumoniae serotype... [more]
MUTS2_FINM21.660e-3848.54MutS2 protein OS=Finegoldia magna (strain ATCC 293... [more]
MUTS2_EUBE21.660e-3847.37MutS2 protein OS=Eubacterium eligens (strain ATCC ... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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