FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRZT (MutS2 protein OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 86/186 (46.24%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   44 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            ++  L + HP     V  D+   +    +VITGPNTGGKTI LKT+GL  +MA+SGL IL+   ++V  F+ +FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL M++LE       + T+ATTH+ ELK       F +NA MEFD   L+P Y+ + GVPG
Sbjct:  296 EIQLLHVCHPLVKNAVANDVHFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADRGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTDPQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRGC (MutS2 protein OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 2
Query:   11 RKRSSLSPSEMQVSALELA---HP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            R+R ++ P+     A++L    HP     V  D+        +VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++LE       + T+ATTH+ ELK      D+ ENA MEFD   L+P Y+ + GVPG
Sbjct:  282 RERGAVVPAISDTQAIQLLQVRHPLIQNAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLPILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAGTDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STACT (MutS2 protein OS=Staphylococcus carnosus (strain TM300) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 87/177 (49.15%), Postives = 116/177 (65.54%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+ A  V   I  A   + ++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +K+  FD+V+ DIGDEQS+ QSLSTFS H+K I  I            DE+GAGT+P EG AL MS+L+   + GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  313 LDRATVVANTIEFAEDIQTVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPALDGSKLSVFDNVYCDIGDEQSIEQSLSTFSSHMKNIVEILKHADHNSLILFDELGAGTDPSEGAALAMSILDHVQKLGSLV-MATTHYPELKAYSYNREGVMNASVEFDVNILSPTYKLLMGVPG 488          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LISW6 (MutS2 protein OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 86/177 (48.59%), Postives = 115/177 (64.97%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+ A+ V  DI++      +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+A  E G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GVPG
Sbjct:  312 LDAANVVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILEKVNHKSLILYDELGAGTDPQEGAALAIAILDASHEKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRSV (MutS2 protein OS=Streptococcus sanguinis (strain SK36) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 88/188 (46.81%), Postives = 115/188 (61.17%), Query Frame = 2
Query:   38 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            E  +  L + HP     V  D+        +VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V  F  +FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++LE       + T+ATTH+ ELK      D+ ENA MEFD   L+P Y+ + GVPG
Sbjct:  294 EQDIQLLSVRHPLIENAVANDLHFGLDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLPILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAGTDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACHK (MutS2 protein OS=Bacillus thuringiensis subsp. konkukian GN=mutS2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP +I + +    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   + +++  F ++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACCZ (MutS2 protein OS=Bacillus cereus (strain ZK / E33L) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP +I + +    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   + +++  F ++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACCQ (MutS2 protein OS=Bacillus cereus (strain Q1) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP +I + +    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   + +++  F ++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACC7 (MutS2 protein OS=Bacillus cereus (strain AH187) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP +I + +    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   + +++  F ++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACC4 (MutS2 protein OS=Bacillus cereus (strain B4264) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP +I + +    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   + +++  F ++FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPG 487          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_STRZT2.169e-3846.24MutS2 protein OS=Streptococcus pneumoniae (strain ... [more]
MUTS2_STRGC2.169e-3845.50MutS2 protein OS=Streptococcus gordonii (strain Ch... [more]
MUTS2_STACT2.169e-3849.15MutS2 protein OS=Staphylococcus carnosus (strain T... [more]
MUTS2_LISW62.169e-3848.59MutS2 protein OS=Listeria welshimeri serovar 6b (s... [more]
MUTS2_STRSV2.832e-3846.81MutS2 protein OS=Streptococcus sanguinis (strain S... [more]
MUTS2_BACHK2.832e-3848.54MutS2 protein OS=Bacillus thuringiensis subsp. kon... [more]
MUTS2_BACCZ2.832e-3848.54MutS2 protein OS=Bacillus cereus (strain ZK / E33L... [more]
MUTS2_BACCQ2.832e-3848.54MutS2 protein OS=Bacillus cereus (strain Q1) GN=mu... [more]
MUTS2_BACC72.832e-3848.54MutS2 protein OS=Bacillus cereus (strain AH187) GN... [more]
MUTS2_BACC42.832e-3848.54MutS2 protein OS=Bacillus cereus (strain B4264) GN... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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