FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LACCB (MutS2 protein OS=Lactobacillus casei (strain BL23) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 83/168 (49.40%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   83 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            DI +  K + +VITGPNTGGKTI LKT+GL  +M +SGL I + + +++  FD VFADIGDEQS+ Q+LSTFS H+  I +I            DE+GAGT+P EG AL +++L+A  E G+ + +ATTH+ ELK   Y+     NA MEFD   L+P Y++L GVPG
Sbjct:  319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIGDEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEVGAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPG 485          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LACC3 (MutS2 protein OS=Lactobacillus casei (strain ATCC 334) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 83/168 (49.40%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   83 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            DI +  K + +VITGPNTGGKTI LKT+GL  +M +SGL I + + +++  FD VFADIGDEQS+ Q+LSTFS H+  I +I            DE+GAGT+P EG AL +++L+A  E G+ + +ATTH+ ELK   Y+     NA MEFD   L+P Y++L GVPG
Sbjct:  319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIGDEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEVGAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPG 485          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACSU (MutS2 protein OS=Bacillus subtilis GN=mutSB PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 84/168 (50.00%), Postives = 109/168 (64.88%), Query Frame = 2
Query:   83 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            DI + R    +VITGPNTGGKT+ LKT+GL  +MA+SGLHI + E ++   F+ VFADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL MS+L+    + + + +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  321 DIELGRDFSTIVITGPNTGGKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNIVGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGYNREGVMNASVEFDIETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_BACA2 (MutS2 protein OS=Bacillus amyloliquefaciens (strain FZB42) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 84/168 (50.00%), Postives = 109/168 (64.88%), Query Frame = 2
Query:   83 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            DI +      +VITGPNTGGKT+ LKT+GL  +MA++GLHI + E ++   FD+VFADIGDEQS+ QSLSTFS H+  I NI            DE+GAGT+P EG AL MS+L+    + + + +ATTH+ ELK   Y+     NA +EFD   L P YK+L GVPG
Sbjct:  321 DIELGGDYSTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNIVNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STAS1 (MutS2 protein OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 82/167 (49.10%), Postives = 112/167 (67.07%), Query Frame = 2
Query:   86 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            I  A+    ++ITGPNTGGKT+ LKT+GL ++MA+SG+ I + + +++  F++V+ DIGDEQS+ QSLSTFS H+K I  I            DE+GAGT+P EG AL MS+L+   E GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  323 IEFAQDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGILIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDTTKNSLILFDELGAGTDPSEGAALAMSILDHVHEIGSLV-MATTHYPELKAYSYNREGVMNASVEFDVNTLSPTYKLLMGVPG 488          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LISMH (MutS2 protein OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 85/177 (48.02%), Postives = 113/177 (63.84%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+ A  V  DI++      +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+A    G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GVPG
Sbjct:  312 LDAAKVVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILENVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LISMF (MutS2 protein OS=Listeria monocytogenes serotype 4b (strain F2365) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 85/177 (48.02%), Postives = 113/177 (63.84%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+ A  V  DI++      +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+A    G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GVPG
Sbjct:  312 LDAAKVVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LISMC (MutS2 protein OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 85/177 (48.02%), Postives = 113/177 (63.84%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+ A  V  DI++      +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+A    G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GVPG
Sbjct:  312 LDAAKVVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_LISIN (MutS2 protein OS=Listeria innocua GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 84/177 (47.46%), Postives = 114/177 (64.41%), Query Frame = 2
Query:   56 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+    V  DI++      +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F++VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+A  + G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GVPG
Sbjct:  312 LDAEKVVANDIYLGEDFSTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFENVFADIGDEQSIEQSLSTFSSHMTNIVSILEKVNHKSLILYDELGAGTDPQEGAALAIAILDASHKKGASV-VATTHYPELKAYGYNRAHATNASVEFNVETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_GEOSW (MutS2 protein OS=Geobacillus sp. (strain WCH70) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 85/187 (45.45%), Postives = 118/187 (63.10%), Query Frame = 2
Query:   47 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            +  L+  HP       VP DI + +    +VITGPNTGGKT+ LKT+GL  +MA++GL I + + +++  F SV+ADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+     G+  T+ATTH+ ELK   Y+ D   NA +EFD   L+P YK+L G+PG
Sbjct:  302 IRLLQARHPLIDQDVVVPNDIELGKDYTTIVITGPNTGGKTVTLKTIGLLTLMAQAGLFIPALDGSELAVFRSVYADIGDEQSIEQSLSTFSSHMVNIVDILRNVDHESLVLFDELGAGTDPQEGAALAIAILDEVHGRGA-RTVATTHYPELKAYGYNRDGVINASVEFDTETLRPTYKLLIGIPG 487          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_LACCB1.406e-3749.40MutS2 protein OS=Lactobacillus casei (strain BL23)... [more]
MUTS2_LACC31.406e-3749.40MutS2 protein OS=Lactobacillus casei (strain ATCC ... [more]
MUTS2_BACSU1.406e-3750.00MutS2 protein OS=Bacillus subtilis GN=mutSB PE=3 S... [more]
MUTS2_BACA21.406e-3750.00MutS2 protein OS=Bacillus amyloliquefaciens (strai... [more]
MUTS2_STAS11.836e-3749.10MutS2 protein OS=Staphylococcus saprophyticus subs... [more]
MUTS2_LISMH1.836e-3748.02MutS2 protein OS=Listeria monocytogenes serotype 4... [more]
MUTS2_LISMF1.836e-3748.02MutS2 protein OS=Listeria monocytogenes serotype 4... [more]
MUTS2_LISMC1.836e-3748.02MutS2 protein OS=Listeria monocytogenes serotype 4... [more]
MUTS2_LISIN1.836e-3747.46MutS2 protein OS=Listeria innocua GN=mutS2 PE=3 SV... [more]
MUTS2_GEOSW1.836e-3745.45MutS2 protein OS=Geobacillus sp. (strain WCH70) GN... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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