FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_THERP (MutS2 protein OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 82/171 (47.95%), Postives = 110/171 (64.33%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPID+ +  + R+LVITGPNTGGKT+ LKTVGL  +MA++GL I ++  + +  F ++F DIGDEQS+ Q+LSTFS H+++I               DEI AGT+P EG AL  ++LE   E G+ L I TTH+ ELK         ENA +EFD V L P Y++L G+PG
Sbjct:  327 VPIDVELGERFRILVITGPNTGGKTVALKTVGLLALMAQAGLFIPAAPGSGLSVFPAIFVDIGDEQSIEQNLSTFSSHMRRIVATLQQADASSLVLLDEIAAGTDPQEGAALARAILERLLEIGA-LGIVTTHYPELKVFATGTPGLENASVEFDPVTLSPTYRLLVGLPG 496          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STAHJ (MutS2 protein OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 81/158 (51.27%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  113 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            ++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++  F++V+ DIGDEQS+ QSLSTFS H+K I  I            DE+GAGT+P EG AL MS+L+   E GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  333 VIITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQETDKNSLVLFDELGAGTDPSEGAALAMSILDHVREIGSLV-MATTHYPELKAYSYNREGVMNASVEFDVNTLSPTYKLLMGVPG 489          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOD6 (MutS2 protein OS=Clostridium difficile (strain 630) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 83/167 (49.70%), Postives = 108/167 (64.67%), Query Frame = 2
Query:   86 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            I++ R    LVITGPNTGGKT+ +KTVGL  +M +SGLHI +   + +  +D+VFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P+EG AL +++LE     G+   IATTH+ ELK    +    ENA +EFD   L P YK+L GVPG
Sbjct:  322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVGA-KCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYKLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_TREDE (MutS2 protein OS=Treponema denticola GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 76/171 (44.44%), Postives = 110/171 (64.33%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPID+ +++  RVL+ITGPNTGGKT+ LKT  L  ++ ++G  + +    ++P+FD +  DIGDEQS+ QSLSTFS H+K +  I            DE+G+GT+P EG A+ M++L+   E  + + + TTHHG LK   YS +   NA +EF++  L P Y+IL GVPG
Sbjct:  335 VPIDLKLSKDDRVLIITGPNTGGKTVSLKTAALFALINQTGWPVPAGPLTRLPYFDFIACDIGDEQSMDQSLSTFSAHMKNVSEIIRRAGDKSLIILDELGSGTDPQEGCAIAMAVLDDLLEKKAFVFV-TTHHGALKNYGYSKESCVNASVEFNQNTLSPTYRILMGVPG 504          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_GEOTN (MutS2 protein OS=Geobacillus thermodenitrificans (strain NG80-2) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.341e-37
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 2
Query:   56 LELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L+  HP       VP DI +      +VITGPNTGGKT+ LKTVGL  +MA++GL I +++ ++   F SVFADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +++L+     G+  T+ATTH+ ELK   Y+     NA +EFD   L+P YK+L G+PG
Sbjct:  305 LQARHPLIDQDKAVPNDIVLGGDYTTIVITGPNTGGKTVTLKTVGLLTIMAQAGLFIPAADGSEAAVFRSVFADIGDEQSIEQSLSTFSSHMVNIVDILRHVDEESLVLFDELGAGTDPQEGAALAIAILDEVHGRGA-RTVATTHYPELKAYGYNRPGVVNASVEFDTETLRPTYKLLIGIPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOTE (MutS2 protein OS=Clostridium tetani GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.341e-37
Identity = 84/187 (44.92%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   47 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            V  +E  HP       VP DI++ +    L+ITGPNTGGKT+ LKT+GL  +M  SGL I + E + + +F+ +FADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG AL +S+LE        + +ATTH+ ELK      +  ENA +EFD   L+P Y++L G+PG
Sbjct:  299 VDIIEGKHPLIDTEKVVPTDIYLGKDFTSLIITGPNTGGKTVTLKTLGLIHIMGLSGLLIPAKENSTIAFFEEIFADIGDEQSIEQSLSTFSSHMVNIVDIISKADHKSLVLFDELGAGTDPTEGAALAISILENLRRRKCKI-VATTHYSELKGYALKTEDVENASVEFDVETLRPTYRLLIGIPG 484          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STAEQ (MutS2 protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = 2
Query:  113 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            ++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++  F++V+ DIGDEQS+ QSLSTFS H+K I  I            DE+GAGT+P EG AL MS+L+     GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GVPG
Sbjct:  332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSYNREGVMNASVEFDVETLSPTYKLLMGVPG 488          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOPS (MutS2 protein OS=Clostridium perfringens (strain SM101 / Type A) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   47 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            +  ++  HP       V  DI++ R+   L+ITGPNTGGKT+ LKT GL  +M  SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL +S+LE     G  + ++TTH+ ELK      +  ENA +EF+   L+P Y++L GVPG
Sbjct:  299 IDLMDARHPLIPKDKVVSSDIYLGREFSTLLITGPNTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHMTNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKGYALKTENVENASVEFNVETLRPTYRLLIGVPG 484          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOPE (MutS2 protein OS=Clostridium perfringens GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   47 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            +  ++  HP       V  DI++ R+   L+ITGPNTGGKT+ LKT GL  +M  SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL +S+LE     G  + ++TTH+ ELK      +  ENA +EF+   L+P Y++L GVPG
Sbjct:  299 IDLMDARHPLIPKDKVVSSDIYLGREFSTLLITGPNTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHMTNIVRIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKGYALKTENVENASVEFNVETLRPTYRLLIGVPG 484          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOP1 (MutS2 protein OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   47 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            +  ++  HP       V  DI++ R+   L+ITGPNTGGKT+ LKT GL  +M  SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL +S+LE     G  + ++TTH+ ELK      +  ENA +EF+   L+P Y++L GVPG
Sbjct:  299 IDLMDARHPLIPKDKVVSSDIYLGREFSTLLITGPNTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHMTNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKGYALKTENVENASVEFNVETLRPTYRLLIGVPG 484          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_THERP2.398e-3747.95MutS2 protein OS=Thermomicrobium roseum (strain AT... [more]
MUTS2_STAHJ2.398e-3751.27MutS2 protein OS=Staphylococcus haemolyticus (stra... [more]
MUTS2_CLOD62.398e-3749.70MutS2 protein OS=Clostridium difficile (strain 630... [more]
MUTS2_TREDE4.090e-3744.44MutS2 protein OS=Treponema denticola GN=mutS2 PE=3... [more]
MUTS2_GEOTN5.341e-3746.74MutS2 protein OS=Geobacillus thermodenitrificans (... [more]
MUTS2_CLOTE5.341e-3744.92MutS2 protein OS=Clostridium tetani GN=mutS2 PE=3 ... [more]
MUTS2_STAEQ6.976e-3750.63MutS2 protein OS=Staphylococcus epidermidis (strai... [more]
MUTS2_CLOPS6.976e-3744.39MutS2 protein OS=Clostridium perfringens (strain S... [more]
MUTS2_CLOPE6.976e-3744.39MutS2 protein OS=Clostridium perfringens GN=mutS2 ... [more]
MUTS2_CLOP16.976e-3744.39MutS2 protein OS=Clostridium perfringens (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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