FC868895

Overview
NameFC868895
Unique NameFC868895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_METRJ (60 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.349e-18
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:  202 KGEFYMREDAEVPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQLED 561
            +G  Y+       D ++G  +A  A V ++ + A+ +++ +++A  GT +ANGD+ IGE+IA A +K     +  + + KT  + EL +  GM  DRGYLSPYFITN    E  + +LED
Sbjct:  102 EGAKYVAAGINPMDLKRGIDLATQAAVKDIIARAKKVSTSDEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFITN---AEKMVAELED 217

HSP 2 Score: 35.8094 bits (81), Expect = 2.349e-18
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3 
Query:  567 GTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            G  +LIIAEDIE + LA+LV+N +    K   +  PG
Sbjct:  244 GKPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_METPB (60 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.349e-18
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQLED 561
            D ++G  +A  A V ++ + A+ + S E++A  GT +ANGD+ IGE+IA A +K     +  + + KT  + EL +  GM  DRGYLSPYF+TN    E  + +LED
Sbjct:  115 DLKRGIDLATQAAVKDITARAKKVASSEEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFVTN---AEKMVAELED 217

HSP 2 Score: 35.8094 bits (81), Expect = 2.349e-18
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3 
Query:  567 GTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            G  +LIIAEDIE + LA+LV+N +    K   +  PG
Sbjct:  244 GKPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.349e-18
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G   A+  +V  L + ++ I+  ++IA  GT +AN D  IGELIA+A +K   + +  + + K   + EL++  GM  DRGYLSPYF+TN ++ E  LD
Sbjct:  115 DLKRGIDRAVKEVVAELRTISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDT-ELKVVEGMQFDRGYLSPYFVTNSESMEAELD 216

HSP 2 Score: 39.6614 bits (91), Expect = 2.349e-18
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAEDIE + LA+LV+N +    K C +  PG
Sbjct:  243 SGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_PELLD (60 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.349e-18
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G   A+  +V  L + ++ I+  ++IA  GT +AN D  IGELIA+A +K   + +  + + K   + EL++  GM  DRGYLSPYF+TN +T E  L+
Sbjct:  115 DLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMET-ELKVVEGMQFDRGYLSPYFVTNSETMEAELE 216

HSP 2 Score: 39.6614 bits (91), Expect = 2.349e-18
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAEDIE + LA+LV+N +    K C +  PG
Sbjct:  243 SGRPLLIIAEDIEGEALATLVVNRLRGTLKVCAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_BART1 (60 kDa chaperonin OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.055e-18
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G   A+D +V NL+  A+ I +  +IA  GT +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN +     LD
Sbjct:  115 DLKRGIDAAVDEVVANLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNAEKMVADLD 216

HSP 2 Score: 35.4242 bits (80), Expect = 3.055e-18
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAED+E + LA+LV+N +    K   +  PG
Sbjct:  243 SGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.055e-18
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G   A++ +VGNL+  A+ I +  +IA  GT +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       LD
Sbjct:  115 DLKRGIDAAVEEVVGNLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNADKMVADLD 216

HSP 2 Score: 35.4242 bits (80), Expect = 3.055e-18
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAED+E + LA+LV+N +    K   +  PG
Sbjct:  243 SGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_BARHE (60 kDa chaperonin OS=Bartonella henselae GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.055e-18
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G   A+D +V NL+  A+ I +  +IA  GT +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN +     LD
Sbjct:  115 DLKRGIDAAVDEVVANLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNAEKMVADLD 216

HSP 2 Score: 35.4242 bits (80), Expect = 3.055e-18
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAED+E + LA+LV+N +    K   +  PG
Sbjct:  243 SGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.055e-18
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  247 RQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQL 555
            ++G   A++ALV  L + ++PI   ++IA  GT +AN D+ IG++IA+A EK     +  + + K   +  L+   GM  DRGYLSPYF+T+ +  E  +D +
Sbjct:  117 KRGLDQAVEALVAELKNISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMET-TLETVEGMQFDRGYLSPYFVTDPERMEAAMDNV 218

HSP 2 Score: 37.7354 bits (86), Expect = 3.055e-18
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAEDIE + LA+LV+N +      C +  PG
Sbjct:  243 SGRPLLIIAEDIEGEALATLVVNKLRGVLNVCAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.055e-18
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  247 RQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQL 555
            ++G   A++ALV  L + ++PI   ++IA  GT +AN D+ IG++IA+A EK     +  + + K   +  L+   GM  DRGYLSPYF+T+ +  E  +D +
Sbjct:  117 KRGLDQAVEALVAELKNISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMET-TLETVEGMQFDRGYLSPYFVTDPERMEAAMDNV 218

HSP 2 Score: 37.7354 bits (86), Expect = 3.055e-18
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAEDIE + LA+LV+N +      C +  PG
Sbjct:  243 SGRPLLIIAEDIEGEALATLVVNKLRGVLNVCAVKAPG 280
[Close]
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.055e-18
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITN 522
            D ++G  +A+DA+V +L + A+ +TS  +IA  GT +ANGD  +G+ +A+A +K     +  + + KT  + EL++  GM  DRGYLSPYF+TN
Sbjct:  115 DLKRGIDLAVDAIVKDLAAKAKKVTSNAEIAQVGTISANGDADVGKFLAEAMQKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTN 207

HSP 2 Score: 34.2686 bits (77), Expect = 3.055e-18
Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  ++I+AED+E + LA+LV+N +    K   +  PG
Sbjct:  243 SGKPLVIVAEDVEGEALATLVVNKLRGGLKVAAVKAPG 280
The following BLAST results are available for this feature:
BLAST of FC868895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METRJ2.349e-1836.6760 kDa chaperonin OS=Methylobacterium radiotoleran... [more]
CH60_METPB2.349e-1840.1960 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH60_PROVI2.349e-1838.8360 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_PELLD2.349e-1838.8360 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH60_BART13.055e-1840.7860 kDa chaperonin OS=Bartonella tribocorum (strain... [more]
CH60_BARQU3.055e-1840.7860 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]
CH60_BARHE3.055e-1840.7860 kDa chaperonin OS=Bartonella henselae GN=groL P... [more]
CH60_GEOSM3.055e-1836.8960 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH60_GEOBB3.055e-1836.8960 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH602_AZOC53.055e-1841.4960 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]

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Properties
Property NameValue
Genbank descriptionC31006B10EF AbioticL1 Citrus clementina cDNA clone C31006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868895 ID=FC868895; Name=FC868895; organism=Citrus clementina; type=EST; length=684bp
GGTTCTGTTTTGGTCAATCGAATTCCTCTGTCCTTTCTGCGCAACAAAAT
CACAAACGATGTTGCGCCATGCCTCTAACCTCGCCTCCAAAGTCAGGTTG
CTTGATAACAATTTTCAGCCGGTTCATTTAACTCGGAGCAGACAGTATAC
CGCGGCGGAAGTCACTAAAAGATTTTTGGATTGCACCAATTCTAAAGTTA
AAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGAC
AAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCACA
GCACAACCCATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTGC
AGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAGA
AAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACCC
AGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATTT
GTCACCTTACTTCATCACCAATCATAAGACGAAAGAATGTAGATTGGACC
AGTTAGAAGATATAATGGCACAGATGTACTGATCATTGCTGAAGATATTG
AAAATGATCTCCTAGCAAGTCTTGTCTTAAATGGAGTGGCTACAGCAACC
AAGGCTTGTGTCATAAACCTCCCTGGATTGGAGA
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