FC868899

Overview
NameFC868899
Unique NameFC868899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:57..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOK1 (MutS2 protein OS=Clostridium kluyveri (strain NBRC 12016) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +++G+    LVITGPNTGGKT+ LKT+GL  +MA SGL I + E + V +F  +FADIGDE            H+  I NI            DE+GAGT+P EG AL +S+LE   + GS++ +ATTH+ ELK     ++  ENA +EFD   LKP YK++ G+
Sbjct:  319 VYMGKDFTCLVITGPNTGGKTVALKTMGLLHIMALSGLMIPARENSTVGFFTEIFADIGDEQSIEQNLSTFSSHMTNIINIINNSDEKSLILFDELGAGTDPTEGAALAVSILENLKDRGSMI-VATTHYSELKAYALKSNGVENASVEFDVDTLKPTYKLMIGI 482          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CALS8 (MutS2 protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 74/165 (44.85%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G+   VL+ITGPNTGGKT+ LKTVGL  ++ +SG+ I + E +++  F  +FADIGD+            H+K I  I            DEIGAGT+P EG AL  ++L+  +E GS + IATTH+GELK      D FENA  EFD   LKP Y++L G+
Sbjct:  318 IHLGKDFDVLIITGPNTGGKTVTLKTVGLFCLLCQSGIFIPADEDSQLCIFQKIFADIGDDQSIVQSLSTFSAHMKNIIEITKNADDKTLVLLDEIGAGTDPEEGAALAKAILKYLSEKGSKV-IATTHYGELKIFAQQEDRFENASCEFDVKTLKPTYRLLIGI 481          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_ANATD (MutS2 protein OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 74/165 (44.85%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G+   VL+ITGPNTGGKT+ LKTVGL  ++ +SG+ I + E +++  F  +FADIGD+            H+K I  I            DEIGAGT+P EG AL  ++L+  +E GS + IATTH+GELK      D FENA  EFD   LKP Y++L G+
Sbjct:  318 IHLGKDFDVLIITGPNTGGKTVTLKTVGLFCLLCQSGIFIPADEGSELCIFQKIFADIGDDQSIVQSLSTFSAHMKNIIEITKNADDKTLVLLDEIGAGTDPEEGAALAKAILKYLSEKGSKV-IATTHYGELKIFAQQEDRFENASCEFDVKTLKPTYRLLIGI 481          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOCE (MutS2 protein OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.285e-31
Identity = 71/164 (43.29%), Postives = 99/164 (60.37%), Query Frame = 3
Query:   33 FIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +IG+K   L++TGPNTGGKT+ LKTVGL  +M +SGL + +++  ++  F+ ++ADIGDE            H+K I +I            DE+GAGT+P EG AL MS+LE   + G+  T+ATTH+ ELK    S    ENA  EFD   L+P Y++L GV
Sbjct:  322 WIGEKFSSLIVTGPNTGGKTVSLKTVGLFTLMMQSGLLVPANDGTEMSVFEKIYADIGDEQSIEQSLSTFSSHMKNIVDILSGVNNKSLILLDELGAGTDPTEGAALAMSILECLHQMGA-TTLATTHYSELKVYAISTTGVENASCEFDVETLRPTYRLLIGV 484          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOB8 (MutS2 protein OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.285e-31
Identity = 72/165 (43.64%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G++ + L+ITGPNTGGKT+ +KTVGL  +M  SGL I + + + + +F  +FADIGDE            H+  I NI            DE+GAGT+P EG AL +S+LE     G+ L IATTH+ ELK      D  ENA +EFD   L+P Y++L GV
Sbjct:  319 IYLGEEFQTLMITGPNTGGKTVTIKTVGLLHIMGLSGLLIPARDNSSIAFFKEIFADIGDEQSIEQSLSTFSSHMTNIVNIMKHVDDKSLALFDELGAGTDPAEGAALAVSILETLRNRGAKL-IATTHYSELKAYALKTDGVENASVEFDIETLRPTYRLLIGV 482          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_BACLD (MutS2 protein OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.285e-31
Identity = 77/182 (42.31%), Postives = 105/182 (57.69%), Query Frame = 3
Query:    3 ILGKHCLFP--------IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I  +H L P        I +G +   +VITGPNTGGKT+ LKT+GL  MMA+SGLH+ + E ++   FD +FADIGDE            H+  I +I            DE+GAGT+P EG AL +S+L+   ++G+ + IATTH+ ELK   Y+ +   NA +EFD   L P YK+L GV
Sbjct:  305 IQARHPLLPLDEVVPNDIELGGEYTTIVITGPNTGGKTVTLKTLGLLTMMAQSGLHVPAEEGSETAVFDQVFADIGDEQSIEQSLSTFSSHMVNIVDILKDMTENSLVLFDELGAGTDPQEGAALAISILDEVCQTGARV-IATTHYPELKAYGYNRENVINASVEFDIDTLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRZP (MutS2 protein OS=Streptococcus pneumoniae (strain P1031) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.903e-31
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++ GQ    +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL M++LE       + T+ATTH+ ELK       F +NA MEFD   L+P Y+ + GV
Sbjct:  315 VYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTDPQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGV 478          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRZJ (MutS2 protein OS=Streptococcus pneumoniae (strain JJA) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.903e-31
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++ GQ    +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL M++LE       + T+ATTH+ ELK       F +NA MEFD   L+P Y+ + GV
Sbjct:  315 VYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTDPQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGV 478          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRR6 (MutS2 protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.903e-31
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++ GQ    +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL M++LE       + T+ATTH+ ELK       F +NA MEFD   L+P Y+ + GV
Sbjct:  315 VYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTDPQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGV 478          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRPS (MutS2 protein OS=Streptococcus pneumoniae (strain CGSP14) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.903e-31
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++ GQ    +VITGPNTGGKTI LKT+GL  +MA+SGL IL+ + ++V  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL M++LE       + T+ATTH+ ELK       F +NA MEFD   L+P Y+ + GV
Sbjct:  315 VYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTDPQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGV 478          
The following BLAST results are available for this feature:
BLAST of FC868899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MUTS2_CLOK11.817e-3144.24MutS2 protein OS=Clostridium kluyveri (strain NBRC... [more]
MUTS2_CALS81.817e-3144.85MutS2 protein OS=Caldicellulosiruptor saccharolyti... [more]
MUTS2_ANATD1.817e-3144.85MutS2 protein OS=Anaerocellum thermophilum (strain... [more]
MUTS2_CLOCE5.285e-3143.29MutS2 protein OS=Clostridium cellulolyticum (strai... [more]
MUTS2_CLOB85.285e-3143.64MutS2 protein OS=Clostridium beijerinckii (strain ... [more]
MUTS2_BACLD5.285e-3142.31MutS2 protein OS=Bacillus licheniformis (strain DS... [more]
MUTS2_STRZP6.903e-3143.64MutS2 protein OS=Streptococcus pneumoniae (strain ... [more]
MUTS2_STRZJ6.903e-3143.64MutS2 protein OS=Streptococcus pneumoniae (strain ... [more]
MUTS2_STRR66.903e-3143.64MutS2 protein OS=Streptococcus pneumoniae (strain ... [more]
MUTS2_STRPS6.903e-3143.64MutS2 protein OS=Streptococcus pneumoniae (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31006C05EF AbioticL1 Citrus clementina cDNA clone C31006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868899 ID=FC868899; Name=FC868899; organism=Citrus clementina; type=EST; length=526bp
GGATACTTGGAAAGCATTGCTTATTTCCTATTTTTATTGGTCAGAAAACA
AGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTATTTGCTT
AAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTCACATTT
TATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCACTTTTTGCTGAT
ATTGGTGATGAACAGTCCTTGTCACAATCTTTATTTTCCTTCTCTGGCCA
CTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAATCGTTGG
TGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGCACAGCG
CTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTTATTGAC
AATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACAGTAATG
ACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTAAAGCCA
GCTTACAAGATCCTTTGGGGAGTACC
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