FC868899

Overview
NameFC868899
Unique NameFC868899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:57..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_STAAB (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=mutS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 491
            +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG               + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  591 LDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_STAA9 (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain JH9) GN=mutS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 491
            +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG               + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  591 LDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_STAA8 (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain NCTC 8325) GN=mutS PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 491
            +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG               + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  591 LDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_STAA2 (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain JH1) GN=mutS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 491
            +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG               + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  591 LDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_STAA1 (DNA mismatch repair protein mutS OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=mutS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 491
            +  +T + +ITGPN  GK+  ++ V +  +MA+ G ++   E A +P FD +F  IG               + +                DEIG GT+  +G AL  +++E  AE+    T+ +TH+ EL TL  +    +N  +  +E K
Sbjct:  591 LDNETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKE-AVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEYK 741          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_SHEPA (DNA mismatch repair protein mutS OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mutS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 41/150 (27.33%), Postives = 68/150 (45.33%), Query Frame = 3
Query:   27 PIFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 476
            P+ +  + ++L++TGPN GGK+  ++ V L  +MA  G ++  +E A +   D +F  IG               + +  NI            DEIG GT+  +G +L  S  E  A+    +T+  TH+ EL  L       EN  ++
Sbjct:  604 PVTLNAQRKMLIVTGPNMGGKSTYMRQVALITLMAHIGCYV-PAEQAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTSTYDGLSLAWSAAEYLAKQLQAMTLFATHYFELTQLPEQLSNVENVHLD 752          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS_SHEON (DNA mismatch repair protein mutS OS=Shewanella oneidensis GN=mutS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 40/137 (29.20%), Postives = 63/137 (45.99%), Query Frame = 3
Query:   27 PIFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 437
            P+ +  + R+L++TGPN GGK+  ++ V L  +MA  G  +  +E A +   D +F  IG               + +  NI            DEIG GT+  +G +L  S  E  A+    +T+  TH+ EL  L
Sbjct:  604 PVTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFV-PAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQL 739          
The following BLAST results are available for this feature:
BLAST of FC868899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MUTS_STAAB7.935e-1127.63DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAA97.935e-1127.63DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAA87.935e-1127.63DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAA27.935e-1127.63DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_STAA17.935e-1127.63DNA mismatch repair protein mutS OS=Staphylococcus... [more]
MUTS_SHEPA7.935e-1127.33DNA mismatch repair protein mutS OS=Shewanella pea... [more]
MUTS_SHEON7.935e-1129.20DNA mismatch repair protein mutS OS=Shewanella one... [more]

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Properties
Property NameValue
Genbank descriptionC31006C05EF AbioticL1 Citrus clementina cDNA clone C31006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868899 ID=FC868899; Name=FC868899; organism=Citrus clementina; type=EST; length=526bp
GGATACTTGGAAAGCATTGCTTATTTCCTATTTTTATTGGTCAGAAAACA
AGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTATTTGCTT
AAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTCACATTT
TATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCACTTTTTGCTGAT
ATTGGTGATGAACAGTCCTTGTCACAATCTTTATTTTCCTTCTCTGGCCA
CTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAATCGTTGG
TGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGCACAGCG
CTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTTATTGAC
AATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACAGTAATG
ACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTAAAGCCA
GCTTACAAGATCCTTTGGGGAGTACC
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