FC868899

Overview
NameFC868899
Unique NameFC868899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:57..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRP1 (MutS2 protein OS=Streptococcus pyogenes serotype M1 GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.632e-30
Identity = 70/156 (44.87%), Postives = 95/156 (60.90%), Query Frame = 3
Query:   57 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+  F+++FADIGDE            H+  I +I            DE+GAGT+P EG +L M++LE    S  + T+ATTH+ ELK      +F ENA MEFD   L P Y+ + GV
Sbjct:  324 IVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFNNIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAILEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGV 478          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_LISW6 (MutS2 protein OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.632e-30
Identity = 71/165 (43.03%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G+    +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL +++L+A  E G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GV
Sbjct:  322 IYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILEKVNHKSLILYDELGAGTDPQEGAALAIAILDASHEKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_LISMO (MutS2 protein OS=Listeria monocytogenes GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.632e-30
Identity = 71/165 (43.03%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G+    +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL +++L+A  E G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GV
Sbjct:  322 IYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILEKVNQKSLILYDELGAGTDPQEGAALAIAILDASHEKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_LISIN (MutS2 protein OS=Listeria innocua GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.968e-30
Identity = 70/165 (42.42%), Postives = 100/165 (60.61%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G+    +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+++FADIGDE            H+  I +I            DE+GAGT+P EG AL +++L+A  + G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GV
Sbjct:  322 IYLGEDFSTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFENVFADIGDEQSIEQSLSTFSSHMTNIVSILEKVNHKSLILYDELGAGTDPQEGAALAIAILDASHKKGASV-VATTHYPELKAYGYNRAHATNASVEFNVETLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOD6 (MutS2 protein OS=Clostridium difficile (strain 630) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.968e-30
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G+    LVITGPNTGGKT+ +KTVGL  +M +SGLHI +   + +  +D++FADIGDE            H+  I +I            DE+GAGT+P+EG AL +++LE     G+   IATTH+ ELK    +    ENA +EFD   L P YK+L GV
Sbjct:  322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVGA-KCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOBA (MutS2 protein OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.968e-30
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            + +G +   L+ITGPNTGGKT+ LKTVGL  +MA SGL I +S  + V +F  +FADIGDE            HL  I NI            DE+G GT+P EG AL ++++E  +  G+ L IATTH+ ELK    + +  ENA +EFD   L+P Y++L GV
Sbjct:  319 VVLGDEFDTLMITGPNTGGKTVTLKTVGLLHIMALSGLLIPASSNSSVSFFKEVFADIGDEQSIEQSLSTFSSHLTNIVNIMEYDNRQSLILFDELGGGTDPAEGAALAIAIIENLSSKGAKL-IATTHYSELKAYALNKERVENASVEFDINTLRPTYRLLIGV 482          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_BACA2 (MutS2 protein OS=Bacillus amyloliquefaciens (strain FZB42) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.968e-30
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G     +VITGPNTGGKT+ LKT+GL  +MA++GLHI + E ++   FD++FADIGDE            H+  I NI            DE+GAGT+P EG AL MS+L+    + + + +ATTH+ ELK   Y+     NA +EFD   L P YK+L GV
Sbjct:  322 IELGGDYSTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNIVNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRGC (MutS2 protein OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.302e-29
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +  G     +VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V  F  +FADIGDE            H+  I +I            DE+GAGT+P EG AL +++LE       + T+ATTH+ ELK      D+ ENA MEFD   L+P Y+ + GV
Sbjct:  315 LHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLPILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAGTDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTYRFMQGV 478          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STAS1 (MutS2 protein OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.302e-29
Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I   Q    ++ITGPNTGGKT+ LKT+GL ++MA+SG+ I + + +++  F++++ DIGDE            H+K I  I            DE+GAGT+P EG AL MS+L+   E GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GV
Sbjct:  323 IEFAQDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGILIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDTTKNSLILFDELGAGTDPSEGAALAMSILDHVHEIGSLV-MATTHYPELKAYSYNREGVMNASVEFDVNTLSPTYKLLMGV 486          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_BACAN (MutS2 protein OS=Bacillus anthracis GN=mutS2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.302e-29
Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G+    +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI   + +++  F ++FADIGDE            H+  I +I            DE+GAGT+P EG AL +S+L+     G+ + +ATTH+ ELK   Y+ +   NA +EFD   L P +K+L GV
Sbjct:  322 IMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGV 485          
The following BLAST results are available for this feature:
BLAST of FC868899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MUTS2_STRP17.632e-3044.87MutS2 protein OS=Streptococcus pyogenes serotype M... [more]
MUTS2_LISW67.632e-3043.03MutS2 protein OS=Listeria welshimeri serovar 6b (s... [more]
MUTS2_LISMO7.632e-3043.03MutS2 protein OS=Listeria monocytogenes GN=mutS2 P... [more]
MUTS2_LISIN9.968e-3042.42MutS2 protein OS=Listeria innocua GN=mutS2 PE=3 SV... [more]
MUTS2_CLOD69.968e-3043.03MutS2 protein OS=Clostridium difficile (strain 630... [more]
MUTS2_CLOBA9.968e-3043.64MutS2 protein OS=Clostridium botulinum (strain Ala... [more]
MUTS2_BACA29.968e-3043.64MutS2 protein OS=Bacillus amyloliquefaciens (strai... [more]
MUTS2_STRGC1.302e-2943.64MutS2 protein OS=Streptococcus gordonii (strain Ch... [more]
MUTS2_STAS11.302e-2942.42MutS2 protein OS=Staphylococcus saprophyticus subs... [more]
MUTS2_BACAN1.302e-2942.42MutS2 protein OS=Bacillus anthracis GN=mutS2 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC31006C05EF AbioticL1 Citrus clementina cDNA clone C31006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868899 ID=FC868899; Name=FC868899; organism=Citrus clementina; type=EST; length=526bp
GGATACTTGGAAAGCATTGCTTATTTCCTATTTTTATTGGTCAGAAAACA
AGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTATTTGCTT
AAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTCACATTT
TATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCACTTTTTGCTGAT
ATTGGTGATGAACAGTCCTTGTCACAATCTTTATTTTCCTTCTCTGGCCA
CTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAATCGTTGG
TGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGCACAGCG
CTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTTATTGAC
AATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACAGTAATG
ACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTAAAGCCA
GCTTACAAGATCCTTTGGGGAGTACC
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