FC868899

Overview
NameFC868899
Unique NameFC868899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:57..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_LISMC (MutS2 protein OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.788e-29
Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G+    +VITGPNTGGKTI LKT+GL  +MA+SGL I + E + +  F+ +FADIGDE            H+  I +I            DE+GAGT+P EG AL +++L+A    G+ + +ATTH+ ELK   Y+     NA +EF+   L P YK+L GV
Sbjct:  322 IYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STAEQ (MutS2 protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.947e-29
Identity = 68/156 (43.59%), Postives = 96/156 (61.54%), Query Frame = 3
Query:   57 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++  F++++ DIGDE            H+K I  I            DE+GAGT+P EG AL MS+L+     GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GV
Sbjct:  332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSYNREGVMNASVEFDVETLSPTYKLLMGV 486          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STAES (MutS2 protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 68/156 (43.59%), Postives = 96/156 (61.54%), Query Frame = 3
Query:   57 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++  F++++ DIGDE            H+K I  I            DE+GAGT+P EG AL MS+L+     GSL+ +ATTH+ ELK   Y+ +   NA +EFD   L P YK+L GV
Sbjct:  332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGV 486          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_LEUMM (MutS2 protein OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 69/165 (41.82%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G   + ++ITGPNTGGKTI +KT+GL  +MA+SGL I + + + +  FD +FADIGDE            H+  I ++            DE+GAGT+P EG AL +++L+  A  G+  TIATTH+ ELK   Y+    +NA M FD   L+P Y+ L GV
Sbjct:  323 ISLGDSYKTIIITGPNTGGKTITIKTLGLLQLMAQSGLFITTRQPSTIGIFDEVFADIGDEQSIEQNLSTFSSHMANIVSMLDHIDDKTLVIFDELGAGTDPAEGAALAIAILDKVASLGA-YTIATTHYPELKLYGYNRPETKNASMVFDVETLQPTYQFLMGV 486          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_GEMAT (MutS2 protein OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 67/167 (40.12%), Postives = 97/167 (58.08%), Query Frame = 3
Query:   24 FPIFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            F + +    R ++++GPNTGGKT+ LK +GL  MMA+ G+     E +++  FD L+AD+GDE            HLK +G I            DE+G+GT+P EG ALG ++LE     G+ LT+ATTH G+LK L    +   NA ++FD V+L P Y++L GV
Sbjct:  324 FDLTLHAGERTMLVSGPNTGGKTVLLKAIGLISMMAQCGVPAPLGETSQLAVFDDLYADVGDEQSIEASLSTFSAHLKNLGEILRSATTSSLVLIDELGSGTDPAEGAALGGAILETLTRRGT-LTLATTHLGQLKLLATDVEGVVNASLQFDAVQLAPTYRLLKGV 489          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLONN (MutS2 protein OS=Clostridium novyi (strain NT) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++      +VITGPNTGGKT+ LKTVGL  +MA SGL I +S+ + + +F  +FADIGDE            H+  I NI            DE+GAGT+P EG AL +S+LE   +  + + IATTH+ ELK      D  ENA +EFD   L+P Y++L GV
Sbjct:  319 IYLRDGITSVVITGPNTGGKTVTLKTVGLLHIMAMSGLMITASQGSTISFFKEVFADIGDEQSIEQSLSTFSSHMTNIVNIIDSADENSLVLFDELGAGTDPTEGAALAVSILENLRKRKTKV-IATTHYSELKAYALKVDNVENASVEFDVETLRPTYRLLIGV 482          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_LACPL (MutS2 protein OS=Lactobacillus plantarum GN=mutS2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 69/165 (41.82%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G   + +VITGPNTGGKTI LKT+GL  +MA+SGL I     ++V  ++ +FADIGDE            H++ I +             DE+GAGT+P EG AL +++L+A    G+ + +ATTH+ ELK   ++     NA MEFDE  LKP Y++L G+
Sbjct:  323 ISLGTDYQAMVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYNEIFADIGDEQSIEQNLSTFSSHMENIESFLAQIDAHSLVLVDELGAGTDPQEGAALAIAILDAIGAKGTQV-VATTHYPELKAYGFNRPDTINASMEFDEETLKPTYRLLVGI 486          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_THERP (MutS2 protein OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/163 (42.33%), Postives = 95/163 (58.28%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +G++ R+LVITGPNTGGKT+ LKTVGL  +MA++GL I ++  + +  F ++F DIGDE            H+++I               DEI AGT+P EG AL  ++LE   E G+ L I TTH+ ELK         ENA +EFD V L P Y++L G+
Sbjct:  333 LGERFRILVITGPNTGGKTVALKTVGLLALMAQAGLFIPAAPGSGLSVFPAIFVDIGDEQSIEQNLSTFSSHMRRIVATLQQADASSLVLLDEIAAGTDPQEGAALARAILERLLEIGA-LGIVTTHYPELKVFATGTPGLENASVEFDPVTLSPTYRLLVGL 494          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_PEDPA (MutS2 protein OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G +   LVITGPNTGGKTI LKTVGL  +MA+SG+ I ++E + V  F+ +FADIGDE            H+     I            DE+GAGT+P EG AL +++L+    +G+ +++ TTH+ ELKT  Y      NA MEFD   L+P YK+L G+
Sbjct:  321 IRLGGEYETLVITGPNTGGKTITLKTVGLLQLMAQSGMFIPANENSTVRIFEEIFADIGDEQSIEQNLSTFSSHMDNTIRILGNLNERSLALFDELGAGTDPKEGAALAIAILDKVRSTGA-VSMTTTHYPELKTYGYERMGTINASMEFDVDTLQPTYKLLLGI 484          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOPS (MutS2 protein OS=Clostridium perfringens (strain SM101 / Type A) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 68/165 (41.21%), Postives = 96/165 (58.18%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I++G++   L+ITGPNTGGKT+ LKT GL  +M  SGL I +SE + + +F+ +FADIGDE            H+  I  I            DE+GAGT+P EG AL +S+LE     G  + ++TTH+ ELK      +  ENA +EF+   L+P Y++L GV
Sbjct:  319 IYLGREFSTLLITGPNTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHMTNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKGYALKTENVENASVEFNVETLRPTYRLLIGV 482          
The following BLAST results are available for this feature:
BLAST of FC868899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MUTS2_LISMC3.788e-2942.42MutS2 protein OS=Listeria monocytogenes serotype 4... [more]
MUTS2_STAEQ4.947e-2943.59MutS2 protein OS=Staphylococcus epidermidis (strai... [more]
MUTS2_STAES6.461e-2943.59MutS2 protein OS=Staphylococcus epidermidis (strai... [more]
MUTS2_LEUMM6.461e-2941.82MutS2 protein OS=Leuconostoc mesenteroides subsp. ... [more]
MUTS2_GEMAT6.461e-2940.12MutS2 protein OS=Gemmatimonas aurantiaca (strain T... [more]
MUTS2_CLONN6.461e-2943.64MutS2 protein OS=Clostridium novyi (strain NT) GN=... [more]
MUTS2_LACPL8.438e-2941.82MutS2 protein OS=Lactobacillus plantarum GN=mutS2 ... [more]
MUTS2_THERP1.439e-2842.33MutS2 protein OS=Thermomicrobium roseum (strain AT... [more]
MUTS2_PEDPA1.439e-2843.03MutS2 protein OS=Pediococcus pentosaceus (strain A... [more]
MUTS2_CLOPS1.439e-2841.21MutS2 protein OS=Clostridium perfringens (strain S... [more]

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Properties
Property NameValue
Genbank descriptionC31006C05EF AbioticL1 Citrus clementina cDNA clone C31006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868899 ID=FC868899; Name=FC868899; organism=Citrus clementina; type=EST; length=526bp
GGATACTTGGAAAGCATTGCTTATTTCCTATTTTTATTGGTCAGAAAACA
AGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTATTTGCTT
AAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTCACATTT
TATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCACTTTTTGCTGAT
ATTGGTGATGAACAGTCCTTGTCACAATCTTTATTTTCCTTCTCTGGCCA
CTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAATCGTTGG
TGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGCACAGCG
CTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTTATTGAC
AATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACAGTAATG
ACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTAAAGCCA
GCTTACAAGATCCTTTGGGGAGTACC
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