FC868905

Overview
NameFC868905
Unique NameFC868905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9416 contig Ccv1_Contig9416:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAM (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAC (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAA8 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAA3 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVA 645
            VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP AG + E++AKEG+TVE    +  +      VA
Sbjct:    7 VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDTVEVNALLGAVEAGAASVA 84          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAHJ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S E GV++E +A EG+TVE G  IA +   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEEGVLQEQLASEGDTVEVGQVIATV---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  334 STQKATNMHLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXK 627
            +     N ++    F S   D+V   VP MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G I EL AKEGE V  G  +  I K
Sbjct:   53 NNNNVNNTNIKYQRFYSSANDVV-IKVPSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSGTIVELFAKEGENVTVGNDLYKIAK 149          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVA 645
            VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP  G + E++AKEG+ VE    +  +     G++
Sbjct:    7 VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDIVEVNAVLGFVESGAAGIS 84          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_SCHPO (Probable dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC776.15c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  415 PFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKS 630
            P   ESIT+GTLA++LK PG+ V  DE IA +ETDK+   V +P+AGV+KE + KEG+T+     IAVI  S
Sbjct:   48 PPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQDIAVIDTS 119          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODB2_BACSU (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Bacillus subtilis GN=bfmBB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVA 645
            +P +GES+T+GT++K+L  PGD+V   +PIA++ TDKV  +V S   G I ELV +EG+T++ G  I  I   G   A
Sbjct:    8 MPQLGESVTEGTISKWLVAPGDKVNKYDPIAEVMTDKVNAEVPSSFTGTITELVGEEGQTLQVGEMICKIETEGANPA 85          
The following BLAST results are available for this feature:
BLAST of FC868905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODO2_STAAM8.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAC8.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA88.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA38.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB5.520e-1444.87Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAHJ9.416e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_DICDI1.230e-1342.86Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU3.578e-1341.03Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_SCHPO4.673e-1352.78Probable dihydrolipoyllysine-residue succinyltrans... [more]
ODB2_BACSU3.029e-1244.87Lipoamide acyltransferase component of branched-ch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006D02EF AbioticL1 Citrus clementina cDNA clone C31006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868905 ID=FC868905; Name=FC868905; organism=Citrus clementina; type=EST; length=658bp
GACAAAAACAATCATTCATTCAACCCTGTTGTGTTCGTCTGAAGACTCTC
TCAAAGAAAACGCAACTTGTTCTGTTCGATCAAGCAGGTACATACCTGAA
CAACGATGCTGGGTGTTATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCT
GCTTCGATTTTAGGGCATTCACTGCAGACAATGAGGCCTGCAATGTCTGT
ATCTAGAGTCTCATCTATTGCAGGAAAAGAGACGTTACTGCATTCAAGAG
GATTAGGGCATATCCGGAATTTCAGTCATTTAATTTTTCCAGGTTGCTCT
AAGGGTTGTCAACCATTAAGGGATGTAATTTCTAGCACCCAGAAAGCAAC
TAACATGCATCTGTGGAGCCATCCATTTTCTTCTGAAGGAGGGGATTTGG
TTGATGCTGTTGTCCCTTTTATGGGTGAATCCATAACCGATGGTACTTTG
GCAAAATTCTTGAAGGGTCCTGGTGATAGGGTGGAACTTGATGAACCAAT
TGCTCAAATTGAAACCGATAAGGTAACGATTGATGTTGCAAGTCCGGAAG
CAGGTGTTATCAAAGAGCTTGTAGCCAAAGAAGGGGAGACTGTGGAACCA
GGTACCAAGATTGCTGTGATTTNCAAGTCTGGTGAAGGTGTAGCTCATGT
AGCTCCCT
back to top