FC868907

Overview
NameFC868907
Unique NameFC868907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_SCHPO (Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.088e-114
Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            MEEE+AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIM+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+V NWDDMEKIWHHTFYNELRVAPEEHP LLTEAP+NPKSNREKMTQI+FETFNAPAFYV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGYTFSTTAEREIVRD
Sbjct:    1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRD 211          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_YEAST (Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.002e-113
Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M+ EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPHAI R+D+AGRDLTDYLMKIL+ERGY+FSTTAEREIVRD
Sbjct:    1 MDSEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYSFSTTAEREIVRD 211          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_SACBA (Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.002e-113
Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M+ EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPHAI R+D+AGRDLTDYLMKIL+ERGY+FSTTAEREIVRD
Sbjct:    1 MDSEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYSFSTTAEREIVRD 211          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_CANGA (Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.002e-113
Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M+ EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPHAI R+D+AGRDLTDYLMKIL+ERGY+FSTTAEREIVRD
Sbjct:    1 MDSEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYSFSTTAEREIVRD 211          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT2_ABSGL (Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.002e-113
Identity = 194/213 (91.08%), Postives = 209/213 (98.12%), Query Frame = 2
Query:   59 VTMEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++MEE++AALVIDN SGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG+SLPHAI R+DMAGRDLTDYLM+ILAERG++F+TTAEREIVRD
Sbjct:    1 MSMEEDIAALVIDNASGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKSNREKMTQIMFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYSLPHAILRLDMAGRDLTDYLMRILAERGHSFTTTAEREIVRD 213          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_KLULA (Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 3.415e-113
Identity = 194/211 (91.94%), Postives = 206/211 (97.63%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M+ EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPHAI R+D+AGRD+TDYLMKILAERGY+FSTTAEREIVRD
Sbjct:    1 MDSEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKNNREKMTQILFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDITDYLMKILAERGYSFSTTAEREIVRD 211          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_ASHGO (Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.213e-112
Identity = 193/208 (92.79%), Postives = 204/208 (98.08%), Query Frame = 2
Query:   74 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPHAI R+D+AGRD+TDYLMKIL+ERGY+FSTTAEREIVRD
Sbjct:    5 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDMTDYLMKILSERGYSFSTTAEREIVRD 212          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_YARLI (Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2)

HSP 1 Score: 404.445 bits (1038), Expect = 2.891e-112
Identity = 193/211 (91.47%), Postives = 203/211 (96.21%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ME+E  ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPINPKSNREKMTQI FETFNAPAFYVSIQAVLSLYASGR TGIVLDSGDGVTHVVPIY GFSLPHAI R+DMAGRDLTDYLMKIL+ERGY+F+ +AEREIVRD
Sbjct:    1 MEDETVALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIFFETFNAPAFYVSIQAVLSLYASGRVTGIVLDSGDGVTHVVPIYSGFSLPHAIMRLDMAGRDLTDYLMKILSERGYSFTNSAEREIVRD 211          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_PICAN (Actin OS=Pichia angusta GN=ACT PE=3 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 6.440e-112
Identity = 192/209 (91.87%), Postives = 205/209 (98.09%), Query Frame = 2
Query:   71 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            E+VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGD+AQSKRGILTLRYPIEHG+VTNWD++EKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPHAI R+D+AGRDLTDYLMKIL+ERGYTFSTTAEREIVRD
Sbjct:    4 EDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDKAQSKRGILTLRYPIEHGIVTNWDNLEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQILFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYTFSTTAEREIVRD 212          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.098e-111
Identity = 190/211 (90.05%), Postives = 205/211 (97.16%), Query Frame = 2
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ME+EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFNAPAFYV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEGF+LPHAI R+D+AGRDLTDYL+K L ERGY F+TTAEREIVRD
Sbjct:    1 MEDEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFALPHAILRLDLAGRDLTDYLIKCLGERGYPFTTTAEREIVRD 211          
The following BLAST results are available for this feature:
BLAST of FC868907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT_SCHPO3.088e-11492.42Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV... [more]
ACT_YEAST2.002e-11392.42Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=... [more]
ACT_SACBA2.002e-11392.42Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1[more]
ACT_CANGA2.002e-11392.42Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1[more]
ACT2_ABSGL2.002e-11391.08Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1[more]
ACT_KLULA3.415e-11391.94Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2[more]
ACT_ASHGO2.213e-11292.79Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1[more]
ACT_YARLI2.891e-11291.47Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2[more]
ACT_PICAN6.440e-11291.87Actin OS=Pichia angusta GN=ACT PE=3 SV=1[more]
ACT_COPC71.098e-11190.05Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]

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Properties
Property NameValue
Genbank descriptionC31006D04EF AbioticL1 Citrus clementina cDNA clone C31006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868907 ID=FC868907; Name=FC868907; organism=Citrus clementina; type=EST; length=697bp
GAGAGATACTCTCCATTCCATCTTCCTTTTCTTTTTCTTCAGGTTCATAG
TCTAATCCGTCACAATGGAAGAGGAAGTTGCTGCTCTCGTCATTGACAAT
GGTTCGGGTATGTGTAAGGCCGGTTTCGCCGGTGACGACGCACCTCGAGC
TGTCTTCCCCTCCATTGTCGGTCGTCCCCGTCACCATGGTATCATGATTG
GTATGGGTCAGAAGGACTCCTACGTTGGTGATGAGGCACAGTCCAAGCGT
GGTATCCTCACACTCCGTTACCCCATCGAGCACGGTGTTGTCACCAACTG
GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTG
TTGCCCCCGAAGAGCACCCCATCCTCTTGACCGAAGCTCCTATCAACCCC
AAGTCCAACCGTGAGAAGATGACCCAGATCGTGTTCGAGACTTTCAACGC
CCCCGCCTTCTACGTCTCCATCCAGGCCGTTCTGTCCCTGTACGCCTCCG
GTCGTACCACCGGTATCGTCCTCGACTCCGGTGACGGTGTCACTCACGTT
GTCCCCATCTACGAGGGTTTCTCTCTTCCCCACGCTATCTCGCGTGTCGA
CATGGCTGGCCGTGATTTGACCGATTACCTGATGAAGATTCTGGCTGAGC
GTGGTTACACTTTCTCCACTACTGCCGAGCGTGAAATTGTCCGTGAT
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