FC868907

Overview
NameFC868907
Unique NameFC868907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 6.027e-110
Identity = 185/210 (88.10%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++EVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT3_DROME (Actin-57B OS=Drosophila melanogaster GN=Act57B PE=3 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 6.027e-110
Identity = 184/210 (87.62%), Postives = 205/210 (97.62%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++EVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT2_BACDO (Actin-2, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 6.027e-110
Identity = 184/210 (87.62%), Postives = 205/210 (97.62%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++EVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_ARTSX (Actin, clone 205 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 6.027e-110
Identity = 184/210 (87.62%), Postives = 205/210 (97.62%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++EVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHPILLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTG+VLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGVVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_TAESO (Actin OS=Taenia solium GN=ACT1 PE=3 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 7.872e-110
Identity = 186/210 (88.57%), Postives = 202/210 (96.19%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +EEV ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEEVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQAVLSLYASGRTTGIVLDSGDGVTHSVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTB_XENBO (Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb PE=3 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 7.872e-110
Identity = 184/210 (87.62%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++++AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTB_BOSMU (Actin, cytoplasmic 1 OS=Bos mutus grunniens GN=ACTB PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 7.872e-110
Identity = 183/211 (86.73%), Postives = 205/211 (97.16%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NP++NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 211
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT3_BACDO (Actin-3, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 7.872e-110
Identity = 184/210 (87.62%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++EVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_DIPDE (Actin-1/4 OS=Diphyllobothrium dendriticum GN=ACT1 PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 7.872e-110
Identity = 186/210 (88.57%), Postives = 202/210 (96.19%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +EEV ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEEVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQAVLSLYASGRTTGIVLDSGDGVTHSVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_ACACA (Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 7.872e-110
Identity = 187/211 (88.63%), Postives = 203/211 (96.21%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M +EV ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 MGDEVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 211
The following BLAST results are available for this feature:
BLAST of FC868907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT3_LIMPO6.027e-11088.10Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT3_DROME6.027e-11087.62Actin-57B OS=Drosophila melanogaster GN=Act57B PE=... [more]
ACT2_BACDO6.027e-11087.62Actin-2, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT1_ARTSX6.027e-11087.62Actin, clone 205 OS=Artemia sp. PE=2 SV=1[more]
ACT_TAESO7.872e-11088.57Actin OS=Taenia solium GN=ACT1 PE=3 SV=1[more]
ACTB_XENBO7.872e-11087.62Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb P... [more]
ACTB_BOSMU7.872e-11086.73Actin, cytoplasmic 1 OS=Bos mutus grunniens GN=ACT... [more]
ACT3_BACDO7.872e-11087.62Actin-3, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT1_DIPDE7.872e-11088.57Actin-1/4 OS=Diphyllobothrium dendriticum GN=ACT1 ... [more]
ACT1_ACACA7.872e-11088.63Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31006D04EF AbioticL1 Citrus clementina cDNA clone C31006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868907 ID=FC868907; Name=FC868907; organism=Citrus clementina; type=EST; length=697bp
GAGAGATACTCTCCATTCCATCTTCCTTTTCTTTTTCTTCAGGTTCATAG
TCTAATCCGTCACAATGGAAGAGGAAGTTGCTGCTCTCGTCATTGACAAT
GGTTCGGGTATGTGTAAGGCCGGTTTCGCCGGTGACGACGCACCTCGAGC
TGTCTTCCCCTCCATTGTCGGTCGTCCCCGTCACCATGGTATCATGATTG
GTATGGGTCAGAAGGACTCCTACGTTGGTGATGAGGCACAGTCCAAGCGT
GGTATCCTCACACTCCGTTACCCCATCGAGCACGGTGTTGTCACCAACTG
GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTG
TTGCCCCCGAAGAGCACCCCATCCTCTTGACCGAAGCTCCTATCAACCCC
AAGTCCAACCGTGAGAAGATGACCCAGATCGTGTTCGAGACTTTCAACGC
CCCCGCCTTCTACGTCTCCATCCAGGCCGTTCTGTCCCTGTACGCCTCCG
GTCGTACCACCGGTATCGTCCTCGACTCCGGTGACGGTGTCACTCACGTT
GTCCCCATCTACGAGGGTTTCTCTCTTCCCCACGCTATCTCGCGTGTCGA
CATGGCTGGCCGTGATTTGACCGATTACCTGATGAAGATTCTGGCTGAGC
GTGGTTACACTTTCTCCACTACTGCCGAGCGTGAAATTGTCCGTGAT
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