FC868907

Overview
NameFC868907
Unique NameFC868907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.343e-109
Identity = 187/211 (88.63%), Postives = 203/211 (96.21%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            MEEEVAALV+DNGSGMCKAGFAGDDAPRAVFPSI G PRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK NREKMTQI+FETFNAPAFYV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYL+KIL ERGY+F+TTAEREI RD
Sbjct:    1 MEEEVAALVLDNGSGMCKAGFAGDDAPRAVFPSICGGPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVNREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLIKILMERGYSFTTTAEREIRRD 211
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_MANSE (Actin, muscle OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.343e-109
Identity = 183/210 (87.14%), Postives = 205/210 (97.62%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_LUMRU (Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.343e-109
Identity = 185/208 (88.94%), Postives = 202/208 (97.12%), Query Frame = 2 
Query:   74 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            EV ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 EVTALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 208
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.343e-109
Identity = 185/210 (88.10%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++EVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRV PEEHP+LLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYL KIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVPPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLSKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.754e-109
Identity = 184/210 (87.62%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV DSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTC_HALRO (Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=3 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.754e-109
Identity = 184/210 (87.62%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV DSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT5_DIPDE (Actin-5 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT5 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.754e-109
Identity = 185/207 (89.37%), Postives = 202/207 (97.58%), Query Frame = 2 
Query:   77 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 IAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 207
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT3_PODCA (Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.754e-109
Identity = 183/210 (87.14%), Postives = 205/210 (97.62%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDY+MKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_PODCA (Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.754e-109
Identity = 183/210 (87.14%), Postives = 205/210 (97.62%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDY+MKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_CANDC (Actin OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.290e-109
Identity = 187/209 (89.47%), Postives = 203/209 (97.13%), Query Frame = 2 
Query:   71 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            EEVAALVIDNGSGMCKAGFAGDDAPRAVFPS+VGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPH I R+D+AGRDLT++L KIL+ERGY+F+T+AEREIVRD
Sbjct:    4 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSLVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHGILRIDLAGRDLTNHLSKILSERGYSFTTSAEREIVRD 212
The following BLAST results are available for this feature:
BLAST of FC868907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT_PUCGR1.343e-10988.63Actin OS=Puccinia graminis PE=3 SV=1[more]
ACT_MANSE1.343e-10987.14Actin, muscle OS=Manduca sexta PE=2 SV=1[more]
ACT_LUMRU1.343e-10988.94Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1[more]
ACTM_APLCA1.343e-10988.10Actin, muscle OS=Aplysia californica PE=2 SV=1[more]
ACTC_PISOC1.754e-10987.62Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]
ACTC_HALRO1.754e-10987.62Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=... [more]
ACT5_DIPDE1.754e-10989.37Actin-5 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACT3_PODCA1.754e-10987.14Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1[more]
ACT1_PODCA1.754e-10987.14Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1[more]
ACT_CANDC2.290e-10989.47Actin OS=Candida dubliniensis (strain CD36 / CBS 7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006D04EF AbioticL1 Citrus clementina cDNA clone C31006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868907 ID=FC868907; Name=FC868907; organism=Citrus clementina; type=EST; length=697bp
GAGAGATACTCTCCATTCCATCTTCCTTTTCTTTTTCTTCAGGTTCATAG
TCTAATCCGTCACAATGGAAGAGGAAGTTGCTGCTCTCGTCATTGACAAT
GGTTCGGGTATGTGTAAGGCCGGTTTCGCCGGTGACGACGCACCTCGAGC
TGTCTTCCCCTCCATTGTCGGTCGTCCCCGTCACCATGGTATCATGATTG
GTATGGGTCAGAAGGACTCCTACGTTGGTGATGAGGCACAGTCCAAGCGT
GGTATCCTCACACTCCGTTACCCCATCGAGCACGGTGTTGTCACCAACTG
GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTG
TTGCCCCCGAAGAGCACCCCATCCTCTTGACCGAAGCTCCTATCAACCCC
AAGTCCAACCGTGAGAAGATGACCCAGATCGTGTTCGAGACTTTCAACGC
CCCCGCCTTCTACGTCTCCATCCAGGCCGTTCTGTCCCTGTACGCCTCCG
GTCGTACCACCGGTATCGTCCTCGACTCCGGTGACGGTGTCACTCACGTT
GTCCCCATCTACGAGGGTTTCTCTCTTCCCCACGCTATCTCGCGTGTCGA
CATGGCTGGCCGTGATTTGACCGATTACCTGATGAAGATTCTGGCTGAGC
GTGGTTACACTTTCTCCACTACTGCCGAGCGTGAAATTGTCCGTGAT
back to top