FC868907

Overview
NameFC868907
Unique NameFC868907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTB_RABIT (Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=ACTB PE=2 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.290e-109
Identity = 183/211 (86.73%), Postives = 204/211 (96.68%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEE P+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEERPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 211
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT2_DIPDE (Actin-2 OS=Diphyllobothrium dendriticum GN=ACT2 PE=2 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.290e-109
Identity = 185/210 (88.10%), Postives = 202/210 (96.19%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +EEV ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMT+I+FETFN PA YV IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEEVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTRIMFETFNTPAMYVGIQAVLSLYASGRTTGIVLDSGDGVTHSVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT_CANAL (Actin OS=Candida albicans GN=ACT1 PE=3 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.991e-109
Identity = 186/209 (89.00%), Postives = 203/209 (97.13%), Query Frame = 2 
Query:   71 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            EEVAAL+IDNGSGMCKAGFAGDDAPRAVFPS+VGRPRH GIM+GMGQKDSYVGDEAQSKRGILTLRYPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKSNREKMTQI+FETFN PAFYVSIQAVLSLY+SGRTTGIVLDSGDGVTHVVPIY GFSLPH I R+D+AGRDLT++L KIL+ERGY+F+T+AEREIVRD
Sbjct:    4 EEVAALIIDNGSGMCKAGFAGDDAPRAVFPSLVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHGILRIDLAGRDLTNHLSKILSERGYSFTTSAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTM_PISOC (Actin, muscle OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.991e-109
Identity = 183/210 (87.14%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIV D+GDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDTGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT6_DROSI (Actin, indirect flight muscle OS=Drosophila simulans GN=Act88F PE=3 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 3.907e-109
Identity = 183/210 (87.14%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++  ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGF+LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT6_DROME (Actin, indirect flight muscle OS=Drosophila melanogaster GN=Act88F PE=1 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 3.907e-109
Identity = 183/210 (87.14%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++  ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGF+LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_BACDO (Actin, indirect flight muscle OS=Bactrocera dorsalis PE=3 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 3.907e-109
Identity = 183/210 (87.14%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++  ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGF+LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT5_BACDO (Actin-5, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 5.102e-109
Identity = 181/210 (86.19%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ++E +ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEK+WHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDEASALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKVWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_BOMMO (Actin, muscle-type A1 OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 6.664e-109
Identity = 182/210 (86.67%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +++V ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DDDVRALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGLMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_AEDAE (Actin-1 OS=Aedes aegypti GN=ACT-1 PE=2 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 6.664e-109
Identity = 182/210 (86.67%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+ AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMG KDSYVGDEAQSKRGILTL+YPIEHG++TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGV+H VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDAAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGNKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
The following BLAST results are available for this feature:
BLAST of FC868907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACTB_RABIT2.290e-10986.73Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=A... [more]
ACT2_DIPDE2.290e-10988.10Actin-2 OS=Diphyllobothrium dendriticum GN=ACT2 PE... [more]
ACT_CANAL2.991e-10989.00Actin OS=Candida albicans GN=ACT1 PE=3 SV=1[more]
ACTM_PISOC2.991e-10987.14Actin, muscle OS=Pisaster ochraceus PE=3 SV=1[more]
ACT6_DROSI3.907e-10987.14Actin, indirect flight muscle OS=Drosophila simula... [more]
ACT6_DROME3.907e-10987.14Actin, indirect flight muscle OS=Drosophila melano... [more]
ACT1_BACDO3.907e-10987.14Actin, indirect flight muscle OS=Bactrocera dorsal... [more]
ACT5_BACDO5.102e-10986.19Actin-5, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT1_BOMMO6.664e-10986.67Actin, muscle-type A1 OS=Bombyx mori PE=3 SV=1[more]
ACT1_AEDAE6.664e-10986.67Actin-1 OS=Aedes aegypti GN=ACT-1 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31006D04EF AbioticL1 Citrus clementina cDNA clone C31006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868907 ID=FC868907; Name=FC868907; organism=Citrus clementina; type=EST; length=697bp
GAGAGATACTCTCCATTCCATCTTCCTTTTCTTTTTCTTCAGGTTCATAG
TCTAATCCGTCACAATGGAAGAGGAAGTTGCTGCTCTCGTCATTGACAAT
GGTTCGGGTATGTGTAAGGCCGGTTTCGCCGGTGACGACGCACCTCGAGC
TGTCTTCCCCTCCATTGTCGGTCGTCCCCGTCACCATGGTATCATGATTG
GTATGGGTCAGAAGGACTCCTACGTTGGTGATGAGGCACAGTCCAAGCGT
GGTATCCTCACACTCCGTTACCCCATCGAGCACGGTGTTGTCACCAACTG
GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTG
TTGCCCCCGAAGAGCACCCCATCCTCTTGACCGAAGCTCCTATCAACCCC
AAGTCCAACCGTGAGAAGATGACCCAGATCGTGTTCGAGACTTTCAACGC
CCCCGCCTTCTACGTCTCCATCCAGGCCGTTCTGTCCCTGTACGCCTCCG
GTCGTACCACCGGTATCGTCCTCGACTCCGGTGACGGTGTCACTCACGTT
GTCCCCATCTACGAGGGTTTCTCTCTTCCCCACGCTATCTCGCGTGTCGA
CATGGCTGGCCGTGATTTGACCGATTACCTGATGAAGATTCTGGCTGAGC
GTGGTTACACTTTCTCCACTACTGCCGAGCGTGAAATTGTCCGTGAT
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