FC868907

Overview
NameFC868907
Unique NameFC868907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 55/196 (28.06%), Postives = 94/196 (47.96%), Query Frame = 2
Query:   86 LVIDNGSGMCKAGFAGD-DAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRY--PIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTG--IVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGY 658
            +++DNGS   K+   GD + P A+   I GR            K  YVG +    +   +L +  P E G + NWD  + +W + FYN       +  +LLT+ P+        + Q+VFE +    ++ +  A L  ++SG+     +V+D+G   THV P+  G      I RV++ G+ +T+ L + ++ R Y
Sbjct:    1 MILDNGSYAIKSDRTGDAETPNAL---IRGR-----------DKTVYVGQDLTKCKDYASLVFKRPSEKGQLINWDIQKAVWDNLFYNPQTGVDTDSSLLLTQYPLTLPQVSANIDQVVFEEYGFEQYHRTEAANLVAWSSGQCLDACLVVDAGFNATHVTPVLFGQVHEPGIRRVNVGGKTMTNLLKETVSFRHY 182          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP10_MOUSE (Actin-related protein 10 OS=Mus musculus GN=Actr10 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 49/193 (25.39%), Postives = 92/193 (47.67%), Query Frame = 2
Query:   74 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAER 652
            E  A+VID G    K GFAG+  PR + PS++ R                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  +++ E+ + P   RE +T+++F+ F  P+  ++   +++L   G  + +VLD G   + V+PIYEG  + +    + + G+ L   L   L E+
Sbjct:   12 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMSKPIKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGGKALHKELETQLLEQ 182          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP10_HUMAN (Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 51/204 (25.00%), Postives = 97/204 (47.55%), Query Frame = 2
Query:   74 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAERE 685
            E  A+VID G    K GFAG+  PR + PS++ R                    A   + +  ++Y I    + ++  +++  H  ++  L V P +  +++ E+ + P   RE +T+++F+ F  P+  ++   +++L   G  + +VLD G   + V+PIYEG  + +    + + G+ L   L   L E+  T  T+  +E
Sbjct:   12 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMPKPVRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQ-CTVDTSVAKE 192          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP10_BOVIN (Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 52/204 (25.49%), Postives = 97/204 (47.55%), Query Frame = 2
Query:   74 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAERE 685
            E  A+VID G    K GFAG+  PR + PS++ +                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  +++ E+ + P   RE +T+++F+ F  P+  ++   +++L   G  + +VLD G   + V+PIYEG  + +    + + G+ L   L   L E+  T  T A +E
Sbjct:   12 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQ-CTVDTGAAKE 192          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 54/198 (27.27%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   77 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNEL-RVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTG-----IVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAER 652
            +  LV+DNG+   K G++ D    +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  I++TE   N  S +E M +I+FE +   A        LS +   R        I++DSG   TH+VP         AI R+++ G+ LT++L +I++ R
Sbjct:    1 MTTLVLDNGAYNAKIGYSHDSV--SVIPNCQFRSKTARLKTFTANQI----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR 191          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 55/198 (27.78%), Postives = 95/198 (47.98%), Query Frame = 2
Query:   77 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNEL-RVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTG-----IVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAER 652
            +A LV+DNG+   K G++   A  +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  I++TE   N  S +E M +I+FE +   A        LS +   R        I++DSG   TH+VP         AI R+++ G+ LT++L +I++ R
Sbjct:    1 MATLVLDNGAYNAKIGYS--HAHVSVIPNCQFRSKTARLKTFTANQL----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFVDTNIIITEPYFNFSSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR 191          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP6_SCHPO (Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 54/209 (25.84%), Postives = 92/209 (44.02%), Query Frame = 2
Query:   86 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEH--GVVTNWDDMEKIWHHTFYNELRVAPE--EHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTG--------------IVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGY 658
            +V+DNG+   KAGFAG        P+ + R +    +        ++G+E  +     TL++   H  G + +W     +W     N   + P   ++ +LLT+      S      Q+VFE F   A+     A L  +  G  T               +V+DSG   TH++P+ +      A+ RVD+ G+ LT+YL ++++ R Y
Sbjct:    8 IVLDNGAYHIKAGFAGGKVVE--IPNCLTRSKDGNRL--------FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKY 206          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 53/198 (26.77%), Postives = 95/198 (47.98%), Query Frame = 2
Query:   77 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNEL-RVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTG-----IVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAER 652
            +  LV+DNG+   K G++ ++   +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  I++TE   N  S +E M +I+FE +   A        LS +   R        I++DSG   TH+VP         AI R+++ G+ LT++L +I++ R
Sbjct:    1 MTTLVLDNGAYNAKIGYSHENV--SVIPNCQFRSKTARLKTFTANQI----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR 191          
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ARP9_SCHPO (SWI/SNF and RSC complexes subunit arp9 OS=Schizosaccharomyces pombe GN=arp9 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = 2
Query:  272 PIEHGVVTNWDDMEKIWHHTFYNELRVAPEE----HPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAE 679
            PI+ G V +W+ ++  W H  Y+ L   P +    +P+ L         +RE  TQ  FE    P F ++ + ++ LYA G   G+V+D G   T + PI +G  +  A  ++ + GR +T +L  +L E   T  ++ +
Sbjct:  113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLKSSGQ 251          
The following BLAST results are available for this feature:
BLAST of FC868907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ARP6_YARLI8.094e-1428.06Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP10_MOUSE4.017e-1325.39Actin-related protein 10 OS=Mus musculus GN=Actr10... [more]
ARP10_HUMAN4.017e-1325.00Actin-related protein 10 OS=Homo sapiens GN=ACTR10... [more]
ARP10_BOVIN6.852e-1325.49Actin-related protein 10 OS=Bos taurus GN=ACTR10 P... [more]
ARP6_MOUSE9.894e-1227.27Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_CHICK1.292e-1127.78Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]
ARP6_SCHPO2.204e-1125.84Actin-like protein arp6 OS=Schizosaccharomyces pom... [more]
ARP6_HUMAN2.204e-1126.77Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP9_SCHPO6.413e-1128.57SWI/SNF and RSC complexes subunit arp9 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC31006D04EF AbioticL1 Citrus clementina cDNA clone C31006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868907 ID=FC868907; Name=FC868907; organism=Citrus clementina; type=EST; length=697bp
GAGAGATACTCTCCATTCCATCTTCCTTTTCTTTTTCTTCAGGTTCATAG
TCTAATCCGTCACAATGGAAGAGGAAGTTGCTGCTCTCGTCATTGACAAT
GGTTCGGGTATGTGTAAGGCCGGTTTCGCCGGTGACGACGCACCTCGAGC
TGTCTTCCCCTCCATTGTCGGTCGTCCCCGTCACCATGGTATCATGATTG
GTATGGGTCAGAAGGACTCCTACGTTGGTGATGAGGCACAGTCCAAGCGT
GGTATCCTCACACTCCGTTACCCCATCGAGCACGGTGTTGTCACCAACTG
GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTG
TTGCCCCCGAAGAGCACCCCATCCTCTTGACCGAAGCTCCTATCAACCCC
AAGTCCAACCGTGAGAAGATGACCCAGATCGTGTTCGAGACTTTCAACGC
CCCCGCCTTCTACGTCTCCATCCAGGCCGTTCTGTCCCTGTACGCCTCCG
GTCGTACCACCGGTATCGTCCTCGACTCCGGTGACGGTGTCACTCACGTT
GTCCCCATCTACGAGGGTTTCTCTCTTCCCCACGCTATCTCGCGTGTCGA
CATGGCTGGCCGTGATTTGACCGATTACCTGATGAAGATTCTGGCTGAGC
GTGGTTACACTTTCTCCACTACTGCCGAGCGTGAAATTGTCCGTGAT
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