FC868907

Overview
NameFC868907
Unique NameFC868907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT5_XENLA (Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.586e-110
Identity = 186/210 (88.57%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +EE+AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_PNECA (Actin-1 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.586e-110
Identity = 188/211 (89.10%), Postives = 204/211 (96.68%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            ME+E+AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GIM+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHP LLTEAP+NPKSNREKMTQI+FETFN PAFYV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+++AGRDLTDYLMKIL ERGY ++TTAEREIVRD
Sbjct:    1 MEDEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPALLTEAPLNPKSNREKMTQIMFETFNTPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLNLAGRDLTDYLMKILTERGYNYTTTAEREIVRD 211
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT5_CHICK (Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.072e-110
Identity = 185/210 (88.10%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACT1_LUMTE (Actin-1 OS=Lumbricus terrestris GN=ACT1 PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.072e-110
Identity = 186/210 (88.57%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +EEV ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN+PA YV+IQAVLSLYASGRTTGIVLDSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEEVTALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTC_HELTI (Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 185/210 (88.10%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTC_BIOGL (Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 SV=2)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 185/210 (88.10%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTC_BIOAL (Actin, cytoplasmic OS=Biomphalaria alexandrina PE=3 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 185/210 (88.10%), Postives = 204/210 (97.14%), Query Frame = 2 
Query:   68 EEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            +E+VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 212
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTB_XENTR (Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 184/211 (87.20%), Postives = 205/211 (97.16%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 211
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTB_TRIVU (Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=1 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 184/211 (87.20%), Postives = 205/211 (97.16%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 211
[Close]
BLAST of FC868907 vs. ExPASy Swiss-Prot
Match: ACTB_SPECI (Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 184/211 (87.20%), Postives = 205/211 (97.16%), Query Frame = 2 
Query:   65 MEEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRD 697
            M++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKDSYVGDEAQSKRGILTL+YPIEHG+VTNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK+NREKMTQI+FETFN PA YV+IQAVLSLYASGRTTGIV+DSGDGVTH VPIYEG++LPHAI R+D+AGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct:    1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 211
The following BLAST results are available for this feature:
BLAST of FC868907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT5_XENLA1.586e-11088.57Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 S... [more]
ACT1_PNECA1.586e-11089.10Actin-1 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT5_CHICK2.072e-11088.10Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV... [more]
ACT1_LUMTE2.072e-11088.57Actin-1 OS=Lumbricus terrestris GN=ACT1 PE=2 SV=1[more]
ACTC_HELTI2.706e-11088.10Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1[more]
ACTC_BIOGL2.706e-11088.10Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 S... [more]
ACTC_BIOAL2.706e-11088.10Actin, cytoplasmic OS=Biomphalaria alexandrina PE=... [more]
ACTB_XENTR2.706e-11087.20Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb... [more]
ACTB_TRIVU2.706e-11087.20Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=A... [more]
ACTB_SPECI2.706e-11087.20Actin, cytoplasmic 1 OS=Spermophilus citellus GN=A... [more]

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Properties
Property NameValue
Genbank descriptionC31006D04EF AbioticL1 Citrus clementina cDNA clone C31006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868907 ID=FC868907; Name=FC868907; organism=Citrus clementina; type=EST; length=697bp
GAGAGATACTCTCCATTCCATCTTCCTTTTCTTTTTCTTCAGGTTCATAG
TCTAATCCGTCACAATGGAAGAGGAAGTTGCTGCTCTCGTCATTGACAAT
GGTTCGGGTATGTGTAAGGCCGGTTTCGCCGGTGACGACGCACCTCGAGC
TGTCTTCCCCTCCATTGTCGGTCGTCCCCGTCACCATGGTATCATGATTG
GTATGGGTCAGAAGGACTCCTACGTTGGTGATGAGGCACAGTCCAAGCGT
GGTATCCTCACACTCCGTTACCCCATCGAGCACGGTGTTGTCACCAACTG
GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTG
TTGCCCCCGAAGAGCACCCCATCCTCTTGACCGAAGCTCCTATCAACCCC
AAGTCCAACCGTGAGAAGATGACCCAGATCGTGTTCGAGACTTTCAACGC
CCCCGCCTTCTACGTCTCCATCCAGGCCGTTCTGTCCCTGTACGCCTCCG
GTCGTACCACCGGTATCGTCCTCGACTCCGGTGACGGTGTCACTCACGTT
GTCCCCATCTACGAGGGTTTCTCTCTTCCCCACGCTATCTCGCGTGTCGA
CATGGCTGGCCGTGATTTGACCGATTACCTGATGAAGATTCTGGCTGAGC
GTGGTTACACTTTCTCCACTACTGCCGAGCGTGAAATTGTCCGTGAT
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