FC868918

Overview
NameFC868918
Unique NameFC868918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            RLN++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K P KILG+G+
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGD 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_PROMS (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K P KILG+G+
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGK 119          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_PROM9 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL  ++   F + D V+L++L KKGLI     + K P KILG+G+
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLDKLK--DFNDNDTVNLDSLVKKGLI----FKPKFPLKILGNGK 119          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_PROM2 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K P KILG+G+
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGK 119          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNJB (50S ribosomal protein L15 OS=Synechococcus sp. GN=rplO PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 57/125 (45.60%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            RL ++ PQ GS          ++AGQG SCG GMRGQK+R G   R GFEGGQ PLYRR+PKL+      +    +Y  VNL+ +  A    G EVSLE+L ++G++  +      P KILGDGE
Sbjct:    2 RLEDIRPQAGSTRRRRRLGRGVSAGQGASCGKGMRGQKARKGGSTRPGFEGGQTPLYRRLPKLKHFP--RYRRRLEYTLVNLRAL--ADLPAGSEVSLESLMERGIVTTNDG----PLKILGDGE 118          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNY3 (50S ribosomal protein L15 OS=Synechocystis sp. (strain PCC 6803) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 56/127 (44.09%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDI---EAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            L+ L P+ G+          IAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+          P Y P +   +   + AG      V+LE+L + G++  +      P K+LG+GE
Sbjct:    3 LSELSPKDGAKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRLPKLK--------HFPLYNPKHFTVVNVGKLAGLAPNTVVTLESLMEAGIVTSNDG----PLKVLGNGE 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_ANAVT (50S ribosomal protein L15 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            RLN++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++       K P K+LG+G+
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRASGILTAV----KGPLKVLGNGD 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 58/126 (46.03%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            RL +L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L K G++       K P KILG+GE
Sbjct:    4 RLESLKPNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVT----SPKSPLKILGNGE 119          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_PROMA (50S ribosomal protein L15 OS=Prochlorococcus marinus GN=rplO PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 57/124 (45.97%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPFKILGDG 655
            L++L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       L ++ +   L EG  V+L++L K G++       K P K+LG+G
Sbjct:    6 LDSLKPNKGARKRKTRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVT----SPKYPLKVLGNG 119          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNPW (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH7803) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 59/126 (46.83%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            RL +L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L+ G  VSL++L K G++       K P KILG+GE
Sbjct:    4 RLESLKSNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKQFTVVNVSALNDLKAGSTVSLDSLVKDGIVT----SPKHPLKILGNGE 119          
The following BLAST results are available for this feature:
BLAST of FC868918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
RL15_ANASP3.393e-2046.4050S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_PROMS4.431e-2047.5850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM94.431e-2048.3950S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM24.431e-2047.5850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNJB5.787e-2045.6050S ribosomal protein L15 OS=Synechococcus sp. GN=... [more]
RL15_SYNY37.558e-2044.0950S ribosomal protein L15 OS=Synechocystis sp. (st... [more]
RL15_ANAVT7.558e-2045.6050S ribosomal protein L15 OS=Anabaena variabilis (... [more]
RL15_SYNS39.871e-2046.0350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROMA2.199e-1945.9750S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNPW2.872e-1946.8350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC31006E05EF AbioticL1 Citrus clementina cDNA clone C31006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868918 ID=FC868918; Name=FC868918; organism=Citrus clementina; type=EST; length=698bp
AAACAACAAATAATTCCTGAAGCCTGAAGCATAAAATTTCATCATCGCAA
TCATCTCCATCATGGCATCTCTTCTCTCAGTCACTGCAAATTCACTAAGC
TTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAACC
CCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACCAC
CCCAGCTCACTGTCTTAAACCAAGCTGCTTCCGCTTCTGCTTCAGCAACT
GTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTGGG
CCCACAACCGGGGTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAATAG
CTGCTGGTCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAATCG
AGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCTCT
TTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGCTG
GGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTGGT
TTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAAGAAGGGCTT
GATCAATCCCTCAGGAAGAGAAAGGAAACTGCCTTTTAAGATTCTTGGTG
ATGGAGAATAAGCAAGAAGCTGAACTTCAGGCTCGTGCCTCTCTACAT
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